BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1132.p
         (389 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310646|ref|YP_003774738.1| benzoate membrane transport pro...   652   0.0  

>gi|300310646|ref|YP_003774738.1| benzoate membrane transport
           protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/389 (90%), Positives = 369/389 (94%)

Query: 1   MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPTPQLVSWVWAISMGAGVSGLL 60
           MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVP  QLVSWVW ISMGAGVSGLL
Sbjct: 8   MVQRQGSLTAWVAGFLAVLISYAGPLVIFVQAAHAGQVPQAQLVSWVWGISMGAGVSGLL 67

Query: 61  LSWWFRLPIITAWSAPGTALLLSLFPGISMSEVVGAYLMAALILIAIGVTGYFEKILAFI 120
           LS WFRLPIITAWSAPGTALLLSLFPGISM EVVGAYLMAA++LI IGVTGYFEKILAFI
Sbjct: 68  LSGWFRLPIITAWSAPGTALLLSLFPGISMPEVVGAYLMAAVLLILIGVTGYFEKILAFI 127

Query: 121 PKGIAAGMMAGILFQFGVQAFRSSVGAPLMVFAMLAAYLAGRRWWPRYGIVVVALTGFAV 180
           PKGIAAGMMAGIL QFG+QAFRSSV APLMV AMLAAYLAGRRWWPRYGIVVVALTGFAV
Sbjct: 128 PKGIAAGMMAGILLQFGLQAFRSSVAAPLMVAAMLAAYLAGRRWWPRYGIVVVALTGFAV 187

Query: 181 AFASGRTDLGAVSLELARPVFIAPHVGLGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH 240
           AFASG+T LGA+ L+LA PVFIAPH  +GVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH
Sbjct: 188 AFASGQTALGALQLQLAEPVFIAPHFSVGVFFSLTVPLVLVSLTGQFLPGMAVLQLAGYH 247

Query: 241 PPTRAVVTGTGLASLAMACFGGITIVLAAITAALCTGKDAHPEPGKRYIAGIANGVFYLI 300
           P TRAVVTGTGLASLA ACFGGITIVLAAITA+LCTGKDAHP+PGKRYIAGIANGVFYLI
Sbjct: 248 PSTRAVVTGTGLASLATACFGGITIVLAAITASLCTGKDAHPDPGKRYIAGIANGVFYLI 307

Query: 301 GGTFAASIVTLFAAFPKELIAALAGLALIGAIVSNLRLMSQEGSYLEPSVITFLATASGM 360
           GGTFAASIVTLF AFPKELIAALAGLALIGAIVSN+RLMS+EG Y+EPSVITFLATASGM
Sbjct: 308 GGTFAASIVTLFTAFPKELIAALAGLALIGAIVSNIRLMSEEGDYVEPSVITFLATASGM 367

Query: 361 SLFGLGAAFWGVVFGMSAYWLIGRPLKKT 389
           +LFGLGAAFWGV+ GM+AYWLIGRP++K 
Sbjct: 368 TLFGLGAAFWGVMVGMAAYWLIGRPVQKK 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,188,271
Number of extensions: 48032
Number of successful extensions: 320
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 302
Effective length of database: 1,207,925
Effective search space: 364793350
Effective search space used: 364793350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)