BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1118.p
         (807 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310633|ref|YP_003774725.1| SMC domain-containing protein [...  1431   0.0  

>gi|300310633|ref|YP_003774725.1| SMC domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 937

 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 723/793 (91%), Positives = 759/793 (95%)

Query: 1   MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT 60
           MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT
Sbjct: 1   MFHLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKT 60

Query: 61  YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS 120
           YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS
Sbjct: 61  YARHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMS 120

Query: 121 DGDVAIETLAQLPEKEWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR 180
           DGDVAIETLAQLPEK+WLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR
Sbjct: 121 DGDVAIETLAQLPEKDWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLR 180

Query: 181 LVFEVFGDQEVLDRYEEARRHQRDLAAEVAQAEQELAYSEAQLAQLDSRVTLYRQYQGKL 240
           LVFEVFGDQEVLDRYEEARRHQRDLAAEV  AEQELAYSEAQLAQLDSRVTLYRQYQGKL
Sbjct: 181 LVFEVFGDQEVLDRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRQYQGKL 240

Query: 241 REREMLATEVIPVLRWHEERQGTATRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA 300
           RERE LATEVIPVLRWHEERQGTA RLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA
Sbjct: 241 RERETLATEVIPVLRWHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQA 300

Query: 301 ARDKVAALERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDATQLLARVDELE 360
           AR+KVA LERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDA QLLARV+ELE
Sbjct: 301 AREKVATLERDKAEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDAAQLLARVEELE 360

Query: 361 QQKSALHDRWRDLEQQRKDANGALERLTGQRQAPRPGDVQQFTRALRQAGIAHHLLADVI 420
           Q KS LHDRWR LEQQRKDA  ALER++GQRQAP+PGDVQQFTR+LRQAGIAHH+LADVI
Sbjct: 361 QNKSDLHDRWRALEQQRKDAQEALERVSGQRQAPKPGDVQQFTRSLRQAGIAHHILADVI 420

Query: 421 EIADDHWRAAAEGVLRASCWVVVLDDPKDEAAAMALAERERYRHYVVADAATATAQPPAE 480
           EI+DDHWRAAAEGVLRASCWVVVL+DPKDEAAAMALAERERYRHYVVADAA+A  +P A+
Sbjct: 421 EISDDHWRAAAEGVLRASCWVVVLEDPKDEAAAMALAERERYRHYVVADAASAPDKPNAD 480

Query: 481 SLLAVLRFSAKAPSWLLRQLAQIRRVADTAEGASSGGEWITAQAYWRDGRGGRSVWRDPG 540
           SLLAVLRFSAKAPSWLLRQLAQIRRV DT EGAS GGEWIT QAYWRDGRGGRSVWRDPG
Sbjct: 481 SLLAVLRFSAKAPSWLLRQLAQIRRVDDTVEGASVGGEWITPQAYWRDGRGGRSVWRDPG 540

Query: 541 DYQFGAAALASRQASIQKRLATLDEQLTDIVLKQSEVKRQLEAARKATEGHLAAEVLARR 600
           DYQFGAAA+ASRQASIQKRLA+LDEQLTDIVLKQSEVKRQL+AA+KAT+GHLAAE LARR
Sbjct: 541 DYQFGAAAMASRQASIQKRLASLDEQLTDIVLKQSEVKRQLDAAKKATQGHLAAEALARR 600

Query: 601 SEEFDQARHQLPALRQARVAASERWFQLDAQYAEAIEQRTILDGRHDALQRRLRDSEGDL 660
           SEEF++AR QLP+LRQAR+AASERW QLD  +A AIEQRTI+DG+H AL+RRLR+SEGDL
Sbjct: 601 SEEFEEARRQLPSLRQARMAASERWSQLDLHHAAAIEQRTIIDGKHAALERRLRESEGDL 660

Query: 661 AGQERDWRIRHDEQRARALASRAQKSRFPQRWIATDALQALYDKYTNAKQAELRMASVES 720
           AGQER+WR+RHDEQRARALASRAQK+ FPQRWI+  +LQ LY+KYTNAKQAELRM SVE+
Sbjct: 661 AGQEREWRVRHDEQRARALASRAQKAGFPQRWISGASLQLLYEKYTNAKQAELRMTSVEN 720

Query: 721 ELETGQWEKDGTVEDKHLIMQGTVGNQRNELDSRKISNAQAEEAVGNARERYIDVLRATV 780
           ELE+GQWEKDGTVEDKHLIMQGTVGNQRNELD+RKISNAQAEEAVGNARERYIDVLRATV
Sbjct: 721 ELESGQWEKDGTVEDKHLIMQGTVGNQRNELDARKISNAQAEEAVGNARERYIDVLRATV 780

Query: 781 RRYRKNIRRSGCL 793
           RRYRKNI   G L
Sbjct: 781 RRYRKNIIDLGAL 793


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,307,853
Number of extensions: 94062
Number of successful extensions: 572
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 1
Length of query: 807
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 714
Effective length of database: 1,179,515
Effective search space: 842173710
Effective search space used: 842173710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)