BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1117.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310632|ref|YP_003774724.1| hypothetical protein Hsero_1300...   360   e-101

>gi|300310632|ref|YP_003774724.1| hypothetical protein Hsero_1300
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  360 bits (925), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/250 (85%), Positives = 221/250 (88%), Gaps = 7/250 (2%)

Query: 1   MSETLDEAGLLAAELLARRWLPRKHPRVRRALVDADLWQALQDRLAQVGLRLVDNIHADH 60
           MSETLDEAGLLAAELLARRWLPRKHPRVRRALVDADLWQALQDRL QVGLRLVDNIHADH
Sbjct: 1   MSETLDEAGLLAAELLARRWLPRKHPRVRRALVDADLWQALQDRLTQVGLRLVDNIHADH 60

Query: 61  ISVALVRPAEYAVFGEAGMNANNNLDLPRDAISLLVVLWSLIVLPKRERQSARAAGDHAE 120
           ISVALVRPAEYAVFGEAGMNANNNL+LPRDAISLLVVLWSLIVLPKRERQSARAAGD  E
Sbjct: 61  ISVALVRPAEYAVFGEAGMNANNNLELPRDAISLLVVLWSLIVLPKRERQSARAAGDAGE 120

Query: 121 QQEEMFHTEKPMPSAAEVSPVVSYKALLADFGNQLGKKTRMDTNLRRLEAHGFILRRGDD 180
           QQEEMF T+KPMPSAAEVSPVVSYK+LLADFG QLGKK RMD NLRRLEAHGFI+RRGDD
Sbjct: 121 QQEEMFQTDKPMPSAAEVSPVVSYKSLLADFGAQLGKKMRMDGNLRRLEAHGFIVRRGDD 180

Query: 181 IAEGPLLDLLLDYDALAPRILDGALGDVLARANARDEASPA-----QADAA--DITQATE 233
           IAEGPLLDLLLDYDALAPRILDGALGDVLARA AR+    A     Q DAA  D +  +E
Sbjct: 181 IAEGPLLDLLLDYDALAPRILDGALGDVLARAGAREPGPEADHESDQDDAAATDPSDPSE 240

Query: 234 STASTEEGDA 243
                 EGDA
Sbjct: 241 PAEPAAEGDA 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 590,149
Number of extensions: 21369
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)