BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1106.p
         (771 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA ...  1229   0.0  

>gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA
           helicase c2 [Herbaspirillum seropedicae SmR1]
          Length = 763

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/744 (81%), Positives = 668/744 (89%)

Query: 12  APRYTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAARRGQGYQSEVVLAADHG 71
           A RYTVSVRALCEFTAK GDLDLRFTPTPTA++G+ GHAIVA+RRG+ YQSE+ LA DHG
Sbjct: 9   ARRYTVSVRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHG 68

Query: 72  PLHVRGRADGYEPGQHRLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCLKLGLPSIH 131
            LHVRGRADGY+  +  LEEVKTYRGQL+S+PDNHRHLHWAQLRVYGHL+C   GL  ++
Sbjct: 69  ALHVRGRADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVN 128

Query: 132 LALVYFDIGSQQETVLEEERSSEELASLFAGQCERFVHWAEQELAHRAARDAALQALRFP 191
           LALVYF+IGSQQET LEE RS EELA LF   CERF+ WA QELAHR ARDAAL+ LRFP
Sbjct: 129 LALVYFEIGSQQETRLEESRSREELAELFGALCERFIGWAAQELAHRQARDAALEQLRFP 188

Query: 192 YGDFRPGQRQLAEAVFRAHRGRRSLLAQAPTGIGKTLGTLFPALKAAPGERLDKILFLAA 251
           +GDFRPGQRQLAEAVFRAH GRRSLLAQAPTGIGKTLGTLFPALKAAP ++LDK+LFLAA
Sbjct: 189 HGDFRPGQRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDKVLFLAA 248

Query: 252 KTPGRQLALDAAASLKGNGQLPLRVLELCARDKACEYPDRLCRGDACPLAQGFYDRLPAA 311
           KTPGRQLALDAAA+LKG G LPLRVLEL AR+KACE+P+RLCRGD+CPLAQGFYDRL  A
Sbjct: 249 KTPGRQLALDAAATLKGQGVLPLRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQA 308

Query: 312 RAACLTQPLLDRQHLREVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMALA 371
           RAACL  PLLDR  LR++AL HQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLY MA A
Sbjct: 309 RAACLDAPLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQA 368

Query: 372 HDWRVSVLADEAHNLVARARSMYSAQLSRASLRAARAVAPPSIAKPLEKLGRAWTAAGKK 431
           HDWRVSVLADEAHNLVARAR MYSAQLSRASLRAARAVAP ++AK LEK+GRAW+A GK+
Sbjct: 369 HDWRVSVLADEAHNLVARARGMYSAQLSRASLRAARAVAPAAVAKLLEKIGRAWSAIGKQ 428

Query: 432 ADLPYQVLEAPPPKFVDALSSSVGAISDYLAQVAVPLEAPLRDFYFDAMAFVRLAESFGP 491
           A LPYQVLEA PP+F++ LS++  AISD+LAQVAVPLE PLRDF+ +AMAFVRLAESFGP
Sbjct: 429 ALLPYQVLEAMPPRFIETLSAANNAISDHLAQVAVPLEPPLRDFHLEAMAFVRLAESFGP 488

Query: 492 HSLLDLTREDERNTVLCIRNVVPAPFLGPRFALAHATTLFSATLAPWHYFADLLGMPAST 551
           HSLLDLTR+DERNTVL +RNVVPAPFLGPRFA AHATTLFSATL PWHYFADLLGMP  T
Sbjct: 489 HSLLDLTRQDERNTVLAVRNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDT 548

Query: 552 AWIDVDSPFHASQLQVRLAHDISTTWQRRAASIAPICALMARQFNERPGNYLAFFSSFEY 611
           AWIDV+SPFHASQL+VR+A DIST WQRR+ASIAPI ALMARQF++RPGNYLAFFSSF+Y
Sbjct: 549 AWIDVESPFHASQLEVRVAQDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDY 608

Query: 612 LQQAHDALLRTHPEIPVWQQSRRMSEDDRDAFLARFEAGGQGIGFAVLGGSFGEGVDLPG 671
           LQQA  A  R HP+IP WQQSR MSE +R+AFLARF  GG+GIGFAVLGGSFGEGVDLPG
Sbjct: 609 LQQALAAFTRAHPDIPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPG 668

Query: 672 RRLIGAFVATLGLPQFNPVNEQLRQRMEALFGCGYDYTYLYPGMQKVVQAAGRVIRTESD 731
            RLIGAFVATLGLPQ N VNEQLR RM+ALFG GYDYTYLYPG+QKVVQAAGRVIRTESD
Sbjct: 669 ERLIGAFVATLGLPQVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIRTESD 728

Query: 732 QGTVWLIDQRFSRPEVRALLPAWW 755
           QG VWLID+RF++PEV+ALLP+WW
Sbjct: 729 QGVVWLIDERFAQPEVQALLPSWW 752


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,545,630
Number of extensions: 112155
Number of successful extensions: 332
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 678
Effective length of database: 1,179,515
Effective search space: 799711170
Effective search space used: 799711170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 134 (56.2 bits)