BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1105.p
         (548 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296...   730   0.0  

>gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296
           [Herbaspirillum seropedicae SmR1]
          Length = 551

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/545 (68%), Positives = 427/545 (78%), Gaps = 5/545 (0%)

Query: 9   FYYLGNFQYVLEWLAQRYADLLSAQERDFIDIFPGLPLASRALLVRMMMRRGERFRASKL 68
           FYYL NFQ VL+WLAQR ADLL  +ER FI  FPGLPL SRAL VRMMMR+GE FR+ +L
Sbjct: 7   FYYLDNFQQVLDWLAQRCADLLDLRERQFIVAFPGLPLPSRALFVRMMMRKGELFRSGRL 66

Query: 69  CYPEIGCPLQAAQALPAGWIERDPLLSLAQLFELSTKPELLRMFDLSTTHKASRKSELLA 128
            YPEIGCPL+AA+ LP  W+ERD  L+L Q F LSTKPEL+R F L+   +A+RK++LLA
Sbjct: 67  DYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAARKTDLLA 126

Query: 129 LLASDPAHAELRPFSQWQGQGSDQVLQLHQQALCDRLRLMFFGNLRQDWSEFVLADLGTF 188
            LA+DPA  + R   QW  QG +  L+L  Q LCDRLRLMFFGNLRQDWSEFVLADLG F
Sbjct: 127 QLAADPAWDQARVLRQWCRQGDELALRLRVQDLCDRLRLMFFGNLRQDWSEFVLADLGRF 186

Query: 189 RYERIALAPEARGFRSRADIDLYLQLHACKERYYAGEAAAVVLAAL----PTGRFDNPWL 244
           RYER+AL+PEARGFR R+D+D YL+LHAC E   AGE AA V+AAL    P    DNPWL
Sbjct: 187 RYERVALSPEARGFRQRSDVDHYLRLHACSEALEAGEDAADVMAALTVAAPAEGHDNPWL 246

Query: 245 ESRRERLLFQLGQLLEKEGDWSQAHAVYAACRYPGARVRAIRVLEKQGRYGPAQALLHTA 304
           +SR ERLLF+LGQ LEK+G W QAHAVYA C YPGAR RA+RVLEKQGRY  A AL   A
Sbjct: 247 QSRYERLLFKLGQHLEKQGHWPQAHAVYARCPYPGARGRAMRVLEKQGRYAQAYALFQAA 306

Query: 305 QQAPENDAERQQLLRIAPRLARQLGLPCSARGRAPAVERLDLLLA-PGGLRVELAVQAHL 363
           Q APE++AERQ L RI PRL RQLG P   R R    +RLDL+LA   G  VE AV+AHL
Sbjct: 307 QAAPESEAERQHLQRIGPRLTRQLGYPPMVRVRTLPPQRLDLVLAMQAGQGVEAAVRAHL 366

Query: 364 HEPEAPVFYVENALANTLFGLLCWEAIFAAIPGAFFHPFQREPADLLSADFYARRRDVFQ 423
             P+APVFYVEN LA  LFGLLCW+AIFAAIPGAFFHPFQREPADL SADF+ARRR+ F 
Sbjct: 367 QAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQREPADLHSADFHARRREAFA 426

Query: 424 RCLAQLDDGSYRHAILATHDAKHGLQSPFVAWGWVTRELLVLALDCIPAAHLKLWCLRIL 483
            CLA+LD   +R AILA ++ K G+ SPFV+WG ++R LLVLALDCIPA HLK WCLRIL
Sbjct: 427 HCLARLDQERHREAILAAYEDKQGVLSPFVSWGAISRGLLVLALDCIPAWHLKHWCLRIL 486

Query: 484 DDVRENRAGFPDLVQFWPQQRRYRMIEVKGPGDRLQDNQLRWLDYCTRHAMPVSVCYLQW 543
           +DVRENR+GFPDL+QFWPQQRRYRMIEVKGPGDRLQDNQ RWL +C +H MPV+VCYLQW
Sbjct: 487 EDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRWLAFCAQHQMPVAVCYLQW 546

Query: 544 EPAVA 548
           +  VA
Sbjct: 547 QQQVA 551


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,881,373
Number of extensions: 82117
Number of successful extensions: 315
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 312
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,193,720
Effective search space: 546723760
Effective search space used: 546723760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)