BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1095.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312216|ref|YP_003776308.1| IS1404 transposase [Herbaspiril...   110   4e-26

>gi|300312216|ref|YP_003776308.1| IS1404 transposase [Herbaspirillum
           seropedicae SmR1]
          Length = 367

 Score =  110 bits (276), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 77/126 (61%)

Query: 1   MDFMHDQLADGRSIRLFNVIDDFNREALDIEVDLSLPSERVIRSRKQIIEWRGKPSAIRC 60
           MDF+HD+LADGR IR  N++DDF +E++ IEVD S+   R+ R   ++ + R  P+ IR 
Sbjct: 208 MDFVHDRLADGRRIRCLNIVDDFTKESVAIEVDTSISGLRLGRVLDKVAQERPLPTMIRV 267

Query: 61  DNGPEYLSGAITQWAQQTGIERQYIQPGQPQQNAYLERLNRTVRYEWLSRYQWDDLEHVQ 120
           D+GPE+ S A+  WA   G++  + QPG+P QNAY+E  N   R E L+ + +  L   +
Sbjct: 268 DHGPEFTSLALDAWAAGRGVKLAFTQPGKPTQNAYIESFNGRFRDECLNDHLFSTLHEAR 327

Query: 121 QFATNW 126
                W
Sbjct: 328 YRIEAW 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 520,991
Number of extensions: 20726
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)