BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1092.p
         (115 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311080|ref|YP_003775172.1| translation initiation inhibito...    79   9e-17
gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...    54   2e-09

>gi|300311080|ref|YP_003775172.1| translation initiation inhibitor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score = 79.0 bits (193), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 60/106 (56%)

Query: 7   LPFSKLRIVNGLAFLSGEVPLTSEGTIPEGISAQTQLVIERIAHTLGEAGLKLTNVVSAT 66
           LPF++    +G  ++SG+V + +   I  GI AQ+   I+ +   L EAG    +VV   
Sbjct: 19  LPFARAVAADGWLYVSGQVAMENGEVIDGGIVAQSHKAIQNVLAILKEAGYGPEHVVRCG 78

Query: 67  VYLTDKNDFSEFNEVYHNFFSAPYPARTTLVADLVLPAKIEIAVVA 112
           V+L D  DF  FN+V+  +F A  PAR  +V+ +V+  K+E+  VA
Sbjct: 79  VWLDDARDFQSFNKVFKEYFGANPPARACVVSSMVVDCKVEVDCVA 124


>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)

Query: 9   FSKLRIVNGLAFLSGEVPLTSEGTIPEGISAQTQLVIERIAHTLGEAGLKLTNVVSATVY 68
            S+L I NG AF+SG+VP  +   I +    Q   V+ +I   L   G+    +VSA V+
Sbjct: 13  MSQLVIANGFAFVSGQVPDHAGAPIAQ----QAAEVLAKIDAQLQAQGIGRERIVSANVW 68

Query: 69  LTDKNDFSEFNEVYHNFFSAPY-PARTTLVADLVLP 103
           L+    F+ FN V+  +  A + P R  + A L+LP
Sbjct: 69  LSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLP 104


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 321,557
Number of extensions: 10935
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,274,215
Effective search space: 53517030
Effective search space used: 53517030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)