BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1087.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol dehydr...   195   3e-51
gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol dehydr...   175   5e-45

>gi|300310269|ref|YP_003774361.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score =  195 bits (496), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/288 (40%), Positives = 162/288 (56%), Gaps = 12/288 (4%)

Query: 25  AALILLASGIASAGVVTTTPGDSEPLPPGTDLALLYYQHAERDRVNVNGRSAVPDFRLTS 84
           AAL L+     +A  +    GD  P P GT + LLYYQHAERD +   G+ A  + RL S
Sbjct: 34  AALSLVVMFPVAAHAIDVDIGDFVPAPGGTTVGLLYYQHAERDSLYTKGQKAALNPRLVS 93

Query: 85  DIALARFVHWTTLGGFVVTPQVILPFGRLDMRGAGNQT-----VSGMGDPMFGSNIWLYN 139
           DI +AR VH+T++GG    PQV+LPFGRLD   AG  T      SG+GD +  +  W  N
Sbjct: 94  DIGIARLVHYTSIGGLAFAPQVLLPFGRLD---AGRDTAPLGQTSGVGDIILAAPFWPLN 150

Query: 140 NKESERYFSLGGYFAIPAGSYDAAKASMNLGENRWKGVVEVNWVQAIISKVLYAEATLEF 199
           +  S  Y  +  Y  +P GSYD  +A +NLGE+RWK  ++V +V+    K  Y + T + 
Sbjct: 151 DAASRTYLGIAPYLYLPTGSYDRNRA-LNLGEHRWKFDLQVGFVKGFTEK-WYLDLTGDV 208

Query: 200 DKFGDNNNYA--GARLRQDNVYELQTHLRYILNDKNQLGVSYFHTIGGETYLNGVAQNDR 257
             +G NN+Y   GA  RQ ++++ Q +LRY       + V      GGET ++GVA ND 
Sbjct: 209 MFYGKNNDYGSNGATQRQKSLFQGQAYLRYQFTPVANIFVGLSQNWGGETRVDGVASNDE 268

Query: 258 QTSDRALLTWTHFLEPRLQLQFQGGTDLYVKNGPQENWRLNFRIARAF 305
               +A +  + F+ P+ QL    G DLYV+NG +EN R+N R+ R F
Sbjct: 269 ARQRKASIGGSWFIGPKTQLLGAIGRDLYVQNGFKENARINLRLLRVF 316


>gi|300310267|ref|YP_003774359.1| quinohemoprotein alcohol
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  175 bits (443), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 11/285 (3%)

Query: 28  ILLASGI-ASAGVVTTTPGDSEPLPPGTDLALLYYQHAERDRVNVNGRSAVPDFRLTSDI 86
           + LA G+ A A  +   P D  P P GT   LLY QHAERD    +G     +  LTSD+
Sbjct: 23  VALAMGVMADACAIDVDPADYVPAPAGTTAGLLYQQHAERDASYSSGNRNPGNPLLTSDV 82

Query: 87  ALARFVHWTTLGGFVVTPQVILPFGRL----DMRGAGNQTVSGMGDPMFGSNIWLYNNKE 142
            + R VH+  +GG+ V PQV+LPF  L    D++  G++  + +GD +  + +WL N+  
Sbjct: 83  TILRLVHYMNIGGYTVGPQVLLPFASLRSGRDIKALGSE--NALGDLILAAPVWLVNDPA 140

Query: 143 SERYFSLGGYFAIPAGSYDAAKASMNLGENRWKGVVEVNWVQAIISKVLYAEATLEFDKF 202
              +F++  Y  +P GSY  ++A +N+GENRWK  ++   VQ  IS  LY + T +   F
Sbjct: 141 KSTFFAVAPYLYLPTGSYSDSRA-LNVGENRWKFDLQAGLVQR-ISGPLYLDLTGDVMVF 198

Query: 203 GDNNNYAGAR--LRQDNVYELQTHLRYILNDKNQLGVSYFHTIGGETYLNGVAQNDRQTS 260
           G NN+Y   R  +RQ  +Y+LQ++LRY  +           T GGET +NGV  +D+   
Sbjct: 199 GKNNDYGSGRGSMRQAPLYQLQSYLRYQFSATTNATAGLSRTWGGETRVNGVDNHDQPNQ 258

Query: 261 DRALLTWTHFLEPRLQLQFQGGTDLYVKNGPQENWRLNFRIARAF 305
            +     + F+  + Q+    G DL V NG +EN+RLN R+ + F
Sbjct: 259 LKISFGGSTFVAAKTQIMGSIGRDLSVDNGFKENFRLNLRLLQIF 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 974,086
Number of extensions: 41282
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)