BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1074.p
         (397 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate dehydro...   312   3e-86
gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase [Herbas...   266   2e-72

>gi|300309586|ref|YP_003773678.1| FMN-dependent L-lactate
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  312 bits (800), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/374 (46%), Positives = 242/374 (64%), Gaps = 9/374 (2%)

Query: 6   NVADYRELAKKRLPKIVFDYLDGGAEDEFGLERNRREFDNILFRPRRLVDVSKRSVATAL 65
           ++ + R +A+KR+P   F+Y++GGAE+E  L  NR  F  I F PR LVDVS R     L
Sbjct: 36  SIEELRAMARKRVPNFCFEYVEGGAEEEISLRHNREVFTRIGFLPRTLVDVSVRRQGRRL 95

Query: 66  FGKHIAAPMVIAPTGLNGVFWPHGDIALAQAAARFGIPFALSTASTTTIEDVARASDGEL 125
           FG+ IA+P +I PTG +G+    GD+A+A AAA  G+PF L+  STT++E+V R S  ++
Sbjct: 96  FGQDIASPFLIGPTGFSGLLAREGDVAMASAAASAGVPFVLTNVSTTSLEEVVRRSGAQV 155

Query: 126 WFQLYVVH-RKLAELLVKRALQAGYTTLILTTDVGVNGKRERDMRNGFGMPMKYTMKTAI 184
           W Q+Y+   R     + +RA  AG   L+LTTD  V GKRE D RN F  P +   +  +
Sbjct: 156 WQQVYLYRDRAFVASVAQRAQAAGIGVLVLTTDSAVYGKREWDARN-FSSPRRLDWRNKL 214

Query: 185 DGILHPRWTWDLL-TNGMPQLANFAS----DQVQDTELQAALMSRQMDASFSWSDLKWLR 239
           D + HPRW  D+L  +G P+ AN       DQ       AA++ + + A+  W+D++WLR
Sbjct: 215 DVLRHPRWLIDILYPHGFPRFANLGDLLPPDQTSVRGAAAAILGQSLSAALDWADVQWLR 274

Query: 240 DMWPHKLLVKGLSREDDVARCASLGIDGVILSNHGGRQLDSAIAPIQALPQSSAAT--QL 297
            +WP KL++KG+ + +D  R  +LG+DG++LSNHGGRQLD A++ +  LP+  AA   QL
Sbjct: 275 GIWPGKLVLKGVMQVEDAQRAVALGVDGIVLSNHGGRQLDGALSTMDVLPEVVAAVKGQL 334

Query: 298 PVLLDSGVRRGSDIVKAVALGADAVLLGRATLYGLAARGQTGVTEVLNLLKSEIDTTLAQ 357
            V+LD G RRG+DIVKA+ALGADAVLLGRAT YGLAA GQ G T  L +L+SE+D  LA 
Sbjct: 335 TVMLDGGFRRGADIVKAIALGADAVLLGRATTYGLAAGGQAGATRALEILRSEVDRVLAL 394

Query: 358 IGCADINELSRDFI 371
           + C DI++L   ++
Sbjct: 395 LACPDIDQLDASYL 408


>gi|300311906|ref|YP_003775998.1| L-lactate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  266 bits (680), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 140/368 (38%), Positives = 213/368 (57%), Gaps = 9/368 (2%)

Query: 7   VADYRELAKKRLPKIVFDYLDGGAEDEFGLERNRREFDNILFRPRRLVDVSKRSVATALF 66
           V D+R LAKKR+PK  +DY D G+  E     N ++   +  R R  ++V +RS  T + 
Sbjct: 7   VEDFRLLAKKRVPKAFYDYADSGSYTESTYRANSKDLAALKLRQRVAINVDERSTRTTMI 66

Query: 67  GKHIAAPMVIAPTGLNGVFWPHGDIALAQAAARFGIPFALSTASTTTIEDVARASDGELW 126
           G  +  P+ IAPTGL G+ W +G++  A AA +FGIPF LST S  +IEDVA  +    W
Sbjct: 67  GHDVTMPVAIAPTGLTGMQWANGEMLGAIAAEKFGIPFTLSTMSICSIEDVASVTTKPFW 126

Query: 127 FQLYVVH-RKLAELLVKRALQAGYTTLILTTDVGVNGKRERDMRNGFGMPMKYTMKTAID 185
           FQLYV+  R   + L++RA  A  + L+LT D+ + G+R +D++NG  +P K T++T +D
Sbjct: 127 FQLYVMRDRGFVKSLIERAKAAKCSALVLTLDLQILGQRHKDLKNGMSVPPKLTLETLLD 186

Query: 186 GILHPRWTWDLLTNGMPQLANFA-----SDQVQDTELQAALMSRQMDASFSWSDLKWLRD 240
               P W    L  G     N A      +     +  +   + Q D + +W D+ W++ 
Sbjct: 187 LASKPGWALRAL-GGRKTFGNLAGHIKGGEGAGGVQTLSKWTASQFDPTLNWDDVAWIKQ 245

Query: 241 MWPHKLLVKGLSREDDVARCASLGIDGVILSNHGGRQLDSAIAPIQALPQSSAAT--QLP 298
            W  KL++KG+   +D       G D +++SNHGGRQLD A++ I+ALP  + A   Q+ 
Sbjct: 246 QWGGKLILKGILDVEDAKLAVQSGADAIVVSNHGGRQLDGAMSSIEALPAIAQAVGDQIE 305

Query: 299 VLLDSGVRRGSDIVKAVALGADAVLLGRATLYGLAARGQTGVTEVLNLLKSEIDTTLAQI 358
           V  D G+R G D++KAVALGA   ++GRA LY L A G  GV+++L +++ E+D ++A  
Sbjct: 306 VWFDGGIRSGQDVLKAVALGARGTMIGRAFLYSLGAMGGEGVSQMLEIMRKELDVSMALT 365

Query: 359 GCADINEL 366
           G  DI ++
Sbjct: 366 GTKDIKDV 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,175,145
Number of extensions: 46885
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 397
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 310
Effective length of database: 1,207,925
Effective search space: 374456750
Effective search space used: 374456750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)