BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1069.p (548 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 848 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 587 e-169 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 519 e-148 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 463 e-131 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 431 e-121 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/548 (88%), Positives = 511/548 (93%), Gaps = 7/548 (1%) Query: 1 MSYLANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY 60 M Y ANMKIGRRLALGFAVILAAASVVVALSIWRLQGIA ATDEMMHEPLTKERLVSDWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLG 120 RTIHTSVRRTTAIAKS+DPSLAA+FA+DAAAASRMST QQKAIEALIESD+EK F KLG Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 QVRKDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 +VRKDYIKYRDAISKAKA+G+ EEAA+ILAGPFDVA KGYLDLLQQLL LQRANIDQVAA Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 NIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 +IQ VY ESRN+MLALA LQVVLGWLFAR+LALGITRPLEQAV+VA+AVAAGDLT RIDE Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 241 KLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 +LAAR DETGKLMHALH MTGNLARIVGQVR GTDAI TAS EIATGNLDLSARTERQAG Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRK 360 ALEETASAMEELTSTVSQNA NARQANQLAASASSVAQQGG+VVSQVISTMGSIN SSRK Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK L Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKAL 420 Query: 421 IDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDM 480 IDDSV+KVG+GSELVTRAGSTMDEVVASVRQVA IV+EISAASSEQSDGISQVNLAI DM Sbjct: 421 IDDSVAKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDM 480 Query: 481 DQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKLLAHNELAELGVGAAPAGRAEVDI 540 DQTTQQNAALVE+AAAAAE+MQEQAARLS+VVSQFKLL +++A AP R+ VDI Sbjct: 481 DQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKLLGQDQIAY-----AP--RSAVDI 533 Query: 541 TPPRQALR 548 TPP ALR Sbjct: 534 TPPLPALR 541 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 587 bits (1514), Expect = e-169, Method: Compositional matrix adjust. Identities = 333/547 (60%), Positives = 406/547 (74%), Gaps = 13/547 (2%) Query: 1 MSYLANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY 60 M+ + NM IGRRL LGFA+IL + ++ + +WRL +AQAT EMM EPL ERL++DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLG 120 + +RRT AIAKS+DP+L YFA + AA+S+ S QK +EAL+ + EEK F K+G Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 QVRKDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAA 180 ++RK Y+ RD I+KAKA G EEA RIL F A Y D +++L+D QR +D A Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 NIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDE 240 I + +SR ++L L L ++LG +FAR L LGIT+PL +AVDV++ VA GDL++ I Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI-- 238 Query: 241 KLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAG 300 + +R DETG+L+ +L M +L IV VRSGTD I+TASSEIA GNLDLS+RTE+QA Sbjct: 239 AVTSR-DETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQAS 297 Query: 301 ALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRK 360 +L ETASAMEEL STV QNA NARQA+QLA SAS+VA+QGG VVSQV+ TMG+INASSRK Sbjct: 298 SLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRK 357 Query: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKIL 420 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK L Sbjct: 358 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKEL 417 Query: 421 IDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDM 480 I+DSV KV GS LV +AG+TM EVV+SVR+V IVAEISAAS+EQ+ GI Q+NLAI M Sbjct: 418 INDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQM 477 Query: 481 DQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKLLAHNELAELGVGAAPAGRAEVDI 540 DQ TQQNAALVE+AAAAA SMQ QA RL Q+VS F+L P R E+D+ Sbjct: 478 DQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSERE----------PLVRREIDV 527 Query: 541 TPPRQAL 547 TP L Sbjct: 528 TPSSPVL 534 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 519 bits (1337), Expect = e-148, Method: Compositional matrix adjust. Identities = 309/518 (59%), Positives = 363/518 (70%), Gaps = 11/518 (2%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 + N+KIG RLA+GF +L +V+VAL +WRL I ATD+M L KER W+ I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 + RT A+ KS D + AYF + A S + QK +EA I EEK F ++G++R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 Y R +I K G A + Y D + + D Q+ IDQ AA I Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 184 QVYHESRNMMLALAVLQVVLG----WLFARSLALGITRPLEQAVDVAQAVAAGDLTTRID 239 + Y R+M+LAL +++VLG WL RS ITRPL QAV +A+ VAAGDLT+RID Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRS----ITRPLNQAVTIAETVAAGDLTSRID 236 Query: 240 EKLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQA 299 ++ DETGKL+ AL TM GNL IVG+VR GT+ I TAS EIATGNLDLSARTE QA Sbjct: 237 ---SSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQA 293 Query: 300 GALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSR 359 G+LEETASAME+LTSTV QNA NARQAN+LAASAS VA QGG VV QV++TMG+I+ASS+ Sbjct: 294 GSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQ 353 Query: 360 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKI 419 KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK Sbjct: 354 KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQ 413 Query: 420 LIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAIND 479 LIDDSV KV GS LV RAG TM EVV SV +V +V EI+ AS EQSDGI QVNLAI Sbjct: 414 LIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITH 473 Query: 480 MDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 +D+TTQQNAALVEQAAAAA SMQ+QAA L+ VS F+L Sbjct: 474 IDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 463 bits (1191), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/516 (54%), Positives = 361/516 (69%), Gaps = 3/516 (0%) Query: 4 LANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWYRTI 63 + +++IG RL GFAV+L + VV A+ IWRL+ +A T +MM PL ERLVS W + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 64 HTSVRRTTAIAKSADPSLAAYFAEDAAAASRMSTAQQKAIEALIESDEEKTAFAKLGQVR 123 +++RTT + KS DP L A+ A++AAA+S+ S K +E L+ S+EEK FA + R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 124 KDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDLQRANIDQVAANIQ 183 K ++ RD I AK G + + + AK D ++ LLD +RA IDQ++A IQ Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 184 QVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVAAGDLTTRIDEKLA 243 Q S++ ++ L V+ ++ G FA L ITRP+ A+ ++Q VAAGDLT+R A Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQ---A 238 Query: 244 ARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLDLSARTERQAGALE 303 DE G+L+ +L M+ L +V VR G D+I AS EIA GNLDLSARTE QAGALE Sbjct: 239 MGRDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALE 298 Query: 304 ETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVISTMGSINASSRKIVD 363 +TA+++EELTS+V N+ NA QAN+L ++A+SVA QGG V+ Q+ISTM +IN SSRKIVD Sbjct: 299 QTAASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVD 358 Query: 364 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKILIDD 423 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIDD Sbjct: 359 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDD 418 Query: 424 SVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGISQVNLAINDMDQT 483 SV KV GS LV +AG TM EVV SV+ +V EIS AS +Q++GI QVN A+ MD Sbjct: 419 SVGKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGV 478 Query: 484 TQQNAALVEQAAAAAESMQEQAARLSQVVSQFKLLA 519 TQQNAALVEQAAAAA+S+++QAA+L + V+ F L A Sbjct: 479 TQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQA 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust. Identities = 275/527 (52%), Positives = 352/527 (66%), Gaps = 23/527 (4%) Query: 1 MSYLANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAQATDEMMHEPLTKERLVSDWY 60 M++ N+KI ++L + FA ++ ++ +I L+ + QA+ +M ++W Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDM----------ATNWL 50 Query: 61 RTIHTSVRRTTAIAKSADPSLAAYFA------EDA--AAASRMST--AQQKAIEALIESD 110 TI + ++ + L A EDA A SR+ Q+ A EA I Sbjct: 51 PTIKAAQSIQASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEA 110 Query: 111 EEKTAFAKLGQVRKDYIKYRDAISKAKADGQPEEAARILAGPFDVAAKGYLDLLQQLLDL 170 EEK + K + Y++ +++ A+G+ EEA + G + + ++ + +++ + Sbjct: 111 EEKVLYEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKV 170 Query: 171 QRANIDQVAANIQQVYHESRNMMLALAVLQVVLGWLFARSLALGITRPLEQAVDVAQAVA 230 A + +QVY + ++ L VV+ A +A ++RPL +AV VA+ VA Sbjct: 171 NDAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVA 230 Query: 231 AGDLTTRIDEKLAARSDETGKLMHALHTMTGNLARIVGQVRSGTDAITTASSEIATGNLD 290 GDLT I A +DETG LMH+L M +L +IVG+VR+GTD ITTAS EIATGNLD Sbjct: 231 QGDLTMDIR---ATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLD 287 Query: 291 LSARTERQAGALEETASAMEELTSTVSQNASNARQANQLAASASSVAQQGGDVVSQVIST 350 LS+RTE QAG+LEETASAMEELT+TV QNA NARQANQLAASAS +A QGG VV QV+ T Sbjct: 288 LSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQT 347 Query: 351 MGSINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 410 M I SS +I DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 348 MEGITESSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 407 Query: 411 ASAAKEIKILIDDSVSKVGTGSELVTRAGSTMDEVVASVRQVAQIVAEISAASSEQSDGI 470 ASAAKEIK LIDDSV KVG GS+LV RAG+TM EVVASVR+V +VAEISAAS+EQS GI Sbjct: 408 ASAAKEIKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGI 467 Query: 471 SQVNLAINDMDQTTQQNAALVEQAAAAAESMQEQAARLSQVVSQFKL 517 ++N AI MD+ TQQNAALVE+AAAAA+S+Q+QAARLSQVVS FKL Sbjct: 468 EEINRAITQMDEVTQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,074,303 Number of extensions: 31564 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 257 Number of HSP's successfully gapped: 71 Length of query: 548 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 458 Effective length of database: 1,193,720 Effective search space: 546723760 Effective search space used: 546723760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)