BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1064.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310589|ref|YP_003774681.1| phosphate ABC transporter perme...   564   e-162
gi|300310588|ref|YP_003774680.1| phosphate ABC transporter perme...    62   4e-11

>gi|300310589|ref|YP_003774681.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  564 bits (1454), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/298 (96%), Positives = 291/298 (97%), Gaps = 1/298 (0%)

Query: 1   MSQTVQL-VEKAATAQVVNPVYRRRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA 59
           MSQTVQ  V+ A  AQ +NPVYR+RLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA
Sbjct: 1   MSQTVQAGVQHADQAQAMNPVYRKRLMQHRMGMLFSFLAMGLGLFVLAWILLTLVFKGVA 60

Query: 60  ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA 119
           ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA
Sbjct: 61  ALNLGLLTENTPGPGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLA 120

Query: 120 QVTRFVTDIMLSAPSIVIGLFIYAIYVANVNHFSGWAGTFAISLIAIPVVVRTTDNMLKL 179
           QVTRFVTDIMLSAPSIVIGLFIYAIYVANV HFSGWAGTFAISLIAIPVVVRTTDNMLKL
Sbjct: 121 QVTRFVTDIMLSAPSIVIGLFIYAIYVANVGHFSGWAGTFAISLIAIPVVVRTTDNMLKL 180

Query: 180 VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF 239
           VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF
Sbjct: 181 VPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGETAPLLFTALNNQFF 240

Query: 240 STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG 297
           STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG
Sbjct: 241 STNMNRPIANLPVVINQFAMSPYDNWVSLAWGGALLITFSVLLLNVLSRTLFKQQIPG 298


>gi|300310588|ref|YP_003774680.1| phosphate ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 113/254 (44%), Gaps = 38/254 (14%)

Query: 20  VYRRRLMQ----HRMGMLFSFLAMGLGLFVLAWILLTLVFKGVAALNL---GLLTENTPG 72
           V RR+ +Q    H++ ++F+       L +L  I+++L+     A      G +T     
Sbjct: 3   VMRRQRLQDFFFHKITLIFALSV----LLMLGGIIVSLIIGAAPAFQAFGPGFITRVEWD 58

Query: 73  PGDAGGGLLNPIVGSLMMVGISTLISTPIGILAGVYLAEYGEESKLAQVTRFVTDIMLSA 132
           P +   G +  IVG+L    I+ LI+ P+     ++L E    +KL +      +++   
Sbjct: 59  PTNNEFGAMIAIVGTLSTSIIALLIAFPVSFGIALFLTEICP-AKLRRPLGTCVELLAGV 117

Query: 133 PSIVIG---LFIYAIYVANVNH----------------FSG-------WAGTFAISLIAI 166
           PSI+ G   LF++A   +                    FSG             +S++ I
Sbjct: 118 PSIIYGMWGLFVFAPLFSEYGQPFLKATLGQIPGIGVLFSGPTMGIGILTAGLILSVMII 177

Query: 167 PVVVRTTDNMLKLVPSGLREAAFALGAPRWKVAIIVRLRAVKAGVVTGVLLAVARISGET 226
           P +     ++ ++VP+ L+E+A+ LG  RW+V   V L   K GVV GV+L + R  GET
Sbjct: 178 PFISSVMRDVFEVVPAVLKESAYGLGCTRWEVVRKVVLPYTKTGVVGGVMLGLGRALGET 237

Query: 227 APLLFTALNNQFFS 240
             + F   N+   S
Sbjct: 238 MAVTFVIGNSHRLS 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 874,514
Number of extensions: 36968
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)