BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1059.p (586 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 900 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 375 e-105 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 375 e-105 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 372 e-104 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 369 e-103 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/603 (79%), Positives = 511/603 (84%), Gaps = 24/603 (3%) Query: 1 MSFKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLI 60 MS KNLSI+AQLAIA LVL+ LL+A+G SGLLGMSAAVSIN QLS+ERLPKTVAADN LI Sbjct: 1 MSIKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAADNTLI 60 Query: 61 WVGRQRTSLDQAAMSLDAAWTERMYGMEANARKEALQWWDKYTALPQTEEGKVLVKKVSD 120 W+GRQRTSLDQAA++ D AW ERMYGM+ANARKEALQWW KYTALPQTEEG+VLVKKVSD Sbjct: 61 WIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVLVKKVSD 120 Query: 121 GIAKTQVELDKFTQAIKSGERQAIADQARKVGQAYSAMQLDGQALNKYETEQAVQSLAAS 180 GI KT+ EL +F + IK+G+RQAIADQARKVG Y+AMQLDGQAL+KYETEQA QS AS Sbjct: 121 GIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQLDGQALSKYETEQAAQSAGAS 180 Query: 181 NARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGDLTQPVHVHS 240 ARYEASR FSI AI+ GLLLA +SWWSLRRAIGEPMQRALRHFDAIASGDLT+ VHVHS Sbjct: 181 MARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTEAVHVHS 240 Query: 241 SNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSARTEQQAASLEET 300 NEMGQLL+GL RMQESLSRTV+AVR GS+AI+TATREIASGNLDLS+RTEQQAASLEET Sbjct: 241 RNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTEQQAASLEET 300 Query: 301 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQIRESSSRITDIV 360 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGN VVG+VVQTME+IR SS++ITDIV Sbjct: 301 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRASSAKITDIV 360 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKEIKDLIMHSV 420 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS AAKEIK+LIMHSV Sbjct: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 +RVQAGSELVGQAGDTMSDVI AVQRVTDIMSEISAASNEQSAGIDQVS AVTQMDEATQ Sbjct: 421 DRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQ 480 Query: 481 QNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPV--PPRAAAPRPVPKAVTP 538 QNAALVEQASAAAKSL+QQAQALMQEVAIFRV A P PP AAA R K P Sbjct: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVNG----AGPTVKPPAAAASRATVK---P 533 Query: 539 AKPVTPKAAPLTKRAALPAA---------------PVTPPAAPAAKPASRATPVGDDGDW 583 A K A A P P A AAKPA R P GD+GDW Sbjct: 534 AAKPAMKPASAAPAAPATPTAPAAPVAKVAPAVKRPALPAAPAAAKPAGRGVPAGDEGDW 593 Query: 584 ETF 586 ETF Sbjct: 594 ETF 596 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 250/533 (46%), Positives = 344/533 (64%), Gaps = 22/533 (4%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINR---QLSEERLPKTVAADNML 59 FKNL + +LA F + LL + V+ + ++ +INR Q+ +R K A ++ Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKIN---NINRAIDQIVNDRYLKVRWAFDLR 61 Query: 60 IWVGRQRTSLDQAAMSLDA--AWTERMYGMEANARKEALQWWDKYTALPQTEEGKVLVKK 117 V Q L A+ ++ A +R +E A K+ + DK TA T G+ K Sbjct: 62 DGVNEQIKYLRGIAIDIENRPANEKRFAQLEV-AVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 118 VSDGIAKTQVELDKFTQAIKSGERQAIADQA--RKVGQAYSAMQLDGQALNKYETEQ--- 172 + + F +K+G + AD+ RK+ + +A + Q Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTS-ADEYVLRKITDTQNNYLALARAFADSQDAQLQA 179 Query: 173 -AVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGD 231 +++A E + S++A++ ++L + + R+I +P+ A+R + +A+GD Sbjct: 180 EGAKAVADGAMAIEVTLACSMAAVLAAIILG----YLMARSIVKPLTEAVRVAENVAAGD 235 Query: 232 LTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLSARTE 291 LT + HS +E GQL+Q L +M ++L V VR G+E+I TA+ EIASGNLDLSARTE Sbjct: 236 LTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTE 295 Query: 292 QQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTMEQIRE 351 QQA SLEETAS+MEE+TSTV+ NADNARQA +AV+AS IA G +VG+VV TM++I + Sbjct: 296 QQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQ 355 Query: 352 SSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKE 411 SS +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+ AAKE Sbjct: 356 SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKE 415 Query: 412 IKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRA 471 IK LI SV +V+ GS LV QAG TM V+ +V+ VTDI++EISAAS EQS+GI++++RA Sbjct: 416 IKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRA 475 Query: 472 VTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGA--VEAAPV 522 VTQMDE TQQNAALVEQA+AAAKS+Q+QA L Q ++IF++E GA + AAPV Sbjct: 476 VTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPV 528 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 375 bits (962), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/397 (56%), Positives = 285/397 (71%), Gaps = 19/397 (4%) Query: 197 VGLLLACFSWWSLRRAIGEPMQRALRHFDAIASGDLTQPVHVHSSNEMGQLLQGLARMQE 256 + L+LA W L I P+ A++ +ASGDLT + V S +E G LL L M E Sbjct: 201 IALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARIEVRSRDETGALLGALKDMNE 260 Query: 257 SLSRTVRAVRGGSEAIATATREIASGNLDLSARTEQQAASLEETASSMEELTSTVKHNAD 316 SL R V VR G+E IATA+ EIA+GNLDLS+RTEQQA+SLEETASSMEELTSTV+ N Sbjct: 261 SLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTSTVQQNTA 320 Query: 317 NARQATTLAVNASTIAADGNVVVGQVVQTMEQIRESSSRITDIVSIIDGIAFQTNILALN 376 NAR+A +A AS IA+ G VV +VV TME+I +SS +I DI+S+IDGIAFQTNILALN Sbjct: 321 NAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQTNILALN 380 Query: 377 AAVEAARAGEQGRGFAVVATEVRALAQRSSGAAKEIKDLIMHSVERVQAGSELVGQAGDT 436 AAVEAARAGEQGRGFAVVA+EVR+LAQRS+ AAKEIK LI SV +V++GS LV +AGDT Sbjct: 381 AAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDT 440 Query: 437 MSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQQNAALVEQASAAAKSL 496 M +++++VQRVT++++EISAA EQ +GI+QVS+AV QMD+ TQQNAALVEQA+AA++SL Sbjct: 441 MREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSL 500 Query: 497 QQQAQALMQEVAIFRVEPG-AVEAAPVPPRAAAPRPVPKAVTPAKPVTPKAAPLTKRAAL 555 Q+QAQ L Q V++FR+E G A+E AP P AP V + + +P T+ + L Sbjct: 501 QEQAQELAQAVSVFRLEAGQALEVAPEP----APASVAASRSGVRPA-------TRSSRL 549 Query: 556 PAAPVTPPAAPAAKPASRATPVG------DDGDWETF 586 P +PV P A+P+A P A G D +W TF Sbjct: 550 P-SPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust. Identities = 261/599 (43%), Positives = 361/599 (60%), Gaps = 50/599 (8%) Query: 3 FKNLSIRAQLAIAFLVLSILLLALGVSGLLGMSAAVSINRQLSEERLPKTVAADNMLIWV 62 F N I +L +AF + +L LG+ ++ + +L+ LP + ++M + + Sbjct: 4 FYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMKVAL 63 Query: 63 GRQRTSLDQAAMSL---DAAWTERMYGMEANARKEALQWWDKYTALPQTEEGKVLVKKVS 119 R R +QA ++L D + + G+ N EAL K +E G+ K + Sbjct: 64 SRVRA--NQAQLALYDGDEKQSSAVIGL-MNKNLEALAEARKQYTGQISEPGE---KALF 117 Query: 120 DGIAKTQVELDKFTQ-------AIKSGERQAIADQARKV-----GQAYSAMQLDGQALNK 167 G+ +DKF A+++G+ D+A+++ + Y ++ D L + Sbjct: 118 PGV---NARIDKFIALHGDTLAAVRAGK----LDEAKRLLLGPAFENYLSLLNDLDKLAQ 170 Query: 168 YETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDAI 227 + +VQS ++ Y+ ++++ ++ +I LL + R I P++ A I Sbjct: 171 VNLDGSVQSTRSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLI 230 Query: 228 ASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDLS 287 A+GDLT + S +E GQL LA M SL R V VR G++AIATA+ +I+SGNLDLS Sbjct: 231 AAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLS 290 Query: 288 ARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTME 347 +RTE+QA+SLEETAS+MEELTSTV+ NA+NARQA LA++ASTIA +G VV QV++TM Sbjct: 291 SRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMG 350 Query: 348 QIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSG 407 I SS +I DI+S+ID IAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS+ Sbjct: 351 SIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAT 410 Query: 408 AAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQ 467 AAKEIK LI +SV++V GS LV +AG T+S+V+ +VQRVTD+MSEISAAS EQ+ GI+Q Sbjct: 411 AAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQ 470 Query: 468 VSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRVEPGAVEAAPVPPRAA 527 V++A+TQMDE TQQNAALVE+A++A++SL QAQ L + V +FR+ PGA A P A Sbjct: 471 VNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL-PGA--ARQQVPEVA 527 Query: 528 APRPVPKAVTPAKPVTPKAAPLTKRAALPAAPVTPPAAPAAKPASRATPVGDDGDWETF 586 A TP +P A T A PA A G D WETF Sbjct: 528 VVATAAPAYTPRRPAVAGA--------------TSTATPALAVAQ-----GPDEQWETF 567 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 369 bits (948), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/563 (43%), Positives = 362/563 (64%), Gaps = 30/563 (5%) Query: 1 MSFKNLSIRAQLAIAFLVLSILL---LALGVSGLLGMSAAVS--INRQLSEERLPKTVAA 55 M F NLSI +LAIAF +L +++ +ALG++ L ++ A+ +N + + + T++ Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 56 --DNMLIWVGRQRTSLDQAAMSLDAAWTERMYGMEANARKEALQWWDKYTALPQTEEGKV 113 D++ I + Q D A ++ + E + E + +D+ T L E K Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSA-------ENTKLYDELTRLVANPEAKA 113 Query: 114 LVKKVSD---GIAKTQVELDKFTQAIKSGERQA----IADQARKVGQAYSAMQLDGQALN 166 + KV++ A + ++DK SG++ A + + + + Y + QLD L+ Sbjct: 114 KLDKVTETRKSYAALRKQIDKLQ---SSGDKDAAIKLMLSEMVPLQKIYFS-QLD--ELS 167 Query: 167 KYETEQAVQSLAASNARYEASRIFSISAIIVGLLLACFSWWSLRRAIGEPMQRALRHFDA 226 + + QS+ + A YE +R+ + A ++ A F W++ R+I P+ RA+ + Sbjct: 168 DTQQKLMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAET 227 Query: 227 IASGDLTQPVHVHSSNEMGQLLQGLARMQESLSRTVRAVRGGSEAIATATREIASGNLDL 286 +A+GDLT + HS++E G+LLQ LA M + L V VR G++++ TA+ +IA+GNLDL Sbjct: 228 VAAGDLTAVIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDL 287 Query: 287 SARTEQQAASLEETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNVVVGQVVQTM 346 S+RTE+QA++LEETASS+EELTS+VK NAD+ R+++ LA NAS +A G + V QVVQTM Sbjct: 288 SSRTEEQASALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTM 347 Query: 347 EQIRESSSRITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS 406 I +SS +I DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ Sbjct: 348 GAINDSSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSA 407 Query: 407 GAAKEIKDLIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGID 466 AAKEIK+LI SV +V +G+ELV QAG TM V+ ++++V+ I+ EISAA+ EQS GI+ Sbjct: 408 TAAKEIKELINDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIE 467 Query: 467 QVSRAVTQMDEATQQNAALVEQASAAAKSLQQQAQALMQEVAIFRV-EPGAVEAAPVPPR 525 QV++A+ QMD TQQNAALVE+A+AAA++LQ QAQ L+ V +FR+ E G + P P Sbjct: 468 QVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDEVGG--SGPAPSA 525 Query: 526 AAAPRPVPKAVTPAKPVTPKAAP 548 A PV + V+ A P K+ P Sbjct: 526 VAPVAPVLRKVSAAAPRATKSLP 548 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,150,091 Number of extensions: 39155 Number of successful extensions: 542 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 71 Length of query: 586 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 496 Effective length of database: 1,193,720 Effective search space: 592085120 Effective search space used: 592085120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)