BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1057.p (674 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 928 0.0 gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 407 e-114 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 356 4e-99 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 355 4e-99 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 347 3e-96 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust. Identities = 527/650 (81%), Positives = 580/650 (89%) Query: 1 MTRLLANLKLWQKFALLGVLGLILFGVPTALYYGSTSHTIKLKQDEIAGVEPVRRLLRSV 60 M +LLANLKLWQKFALLG+LGL+LFGVPT LY+ ST I+ KQ EIAGVEPVRRLLRSV Sbjct: 1 MGQLLANLKLWQKFALLGLLGLVLFGVPTTLYFNSTERVIRFKQQEIAGVEPVRRLLRSV 60 Query: 61 QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALQALGEGLAPMGRDDPQALGSFNKLV 120 QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQAL AL L +GRDD + F + Sbjct: 61 QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALAALAGALEEVGRDDTRIPVLFKNQL 120 Query: 121 ETWNKVRDAVAAKAITPPESFAAHSAAIAALFDLNERMLDYYHYTVDPDFDSTQLINAAF 180 W KVRDAVA+++ITPPESFAAHSAAIAALFDLNER+LDYYHYT+DPDFDSTQLINAAF Sbjct: 121 AAWTKVRDAVASRSITPPESFAAHSAAIAALFDLNERLLDYYHYTIDPDFDSTQLINAAF 180 Query: 181 ISMPALTEDLGRARARGASLLLKKELKMEDRLELVAMLERAQERLNAAKKSFSKGVAANP 240 I+MPALTEDLGRARARGASLLLKKELK+E+RLELVAMLERAQERL++A+KSF+KGVAAN Sbjct: 181 IAMPALTEDLGRARARGASLLLKKELKLEERLELVAMLERAQERLSSARKSFAKGVAANA 240 Query: 241 HLGTQLGSTFQQADRMGNEVIQLTREKILLPQEMSFSPDDYFKRFTAAIDEQFKATRAVT 300 +G +LGSTF++ADR+GNEV++LTRE++LLPQE+SF PD YFK+FT AIDEQFKA VT Sbjct: 241 EIGVKLGSTFEKADRLGNEVMKLTREQVLLPQELSFPPDAYFKQFTLAIDEQFKAIGEVT 300 Query: 301 EALAAQLDAQNADLRRQQLSVLGAVLLLAALVAWLGVMITRSVSVPVQASVAMAGRVANY 360 E LA QLD QNA LRR+QL+VLGA+ LA LVAWLGVMITRSV+ P+ ASVAMAGRVA+Y Sbjct: 301 EVLAGQLDTQNAALRREQLTVLGAIFALALLVAWLGVMITRSVTQPILASVAMAGRVADY 360 Query: 361 DLTARATVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRT 420 DLTAR+ QGRDESAQLLGSLN MT SLGGIVGRVRTSIEVIQHASREIATGNADLSRRT Sbjct: 361 DLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLSRRT 420 Query: 421 ESQASSLEETASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIR 480 ESQASSLEETASAME+LTSTVQNNA +ARQADQLA SAS+LAERGG+VV NVV TM +I+ Sbjct: 421 ESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMDEIK 480 Query: 481 DSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 540 SSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK Sbjct: 481 TSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAK 540 Query: 541 EIKQLISDSVERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVND 600 EIK+LISDSV++V+ GG+LVDEAG TM EIV SVRQVAGIMSEITQAS+EQS GI QVND Sbjct: 541 EIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQVND 600 Query: 601 AIAQMEGITQQNAALVEEAAAAAESLQQQAELLWDAVSVFRIQEDAAHQP 650 AI QME ITQQNAALVEEAAAAAESLQQQAE+LWD V VF+ + A P Sbjct: 601 AITQMEAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGAP 650 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust. Identities = 278/647 (42%), Positives = 391/647 (60%), Gaps = 5/647 (0%) Query: 1 MTRLLANLKLWQKFALLGVLGLILFGVPTALYYGSTSHTIKLKQDEIAGVEPVRRLLRSV 60 M L+ +L+ +KFAL+G L +LF VPT L S + + + E VEP R LL + Sbjct: 1 MRSLINHLRFSRKFALIGALAFLLFIVPTTLLVRSNLQDLAIAEREQLAVEPGRDLLLML 60 Query: 61 QLMQQHRGMSAVMLNGAADMAGPRQAKAAEVDQALQALGEGLAPMGRDDPQALGSFNKLV 120 + MQQHRG+SA+ L+ A R + +V+ L+ + G+ P+ D + + S ++ Sbjct: 61 KQMQQHRGLSALYLSDTNAGAADRAERQKQVEATLERVRTGILPL--QDKELMESLERVA 118 Query: 121 ETWNKVRDAVAAKAITPPESFAAHSAAIAALFDLNERMLDYYHYTVDPDFDSTQLINAAF 180 W + AV++KAIT +S H+ IA DL +++ + ++ + + A Sbjct: 119 SQWRALAQAVSSKAITGAQSNLQHAELIALELDLIDQLANSSGLALEAEAALFYVQRAVM 178 Query: 181 ISMPALTEDLGRARARGASLLLKKELKMEDRLELVAMLERAQERLNAAKKSFSKGVAANP 240 +P LTE LG+ RARGA +L + + E+R L + +RA+ ++A+KS + +AA Sbjct: 179 NELPQLTEALGQTRARGAVMLGRGQASAEERARLENLADRARRSYDSARKSLT--LAAGR 236 Query: 241 H-LGTQLGSTFQQADRMGNEVIQLTREKILLPQEMSFSPDDYFKRFTAAIDEQFKATRAV 299 H L L +A + E +L I+ +S ++ T ID QF A Sbjct: 237 HALPANLERARAEALKAAEEGFKLADSAIIRADNLSMPAPEWVATMTRIIDTQFVLVNAS 296 Query: 300 TEALAAQLDAQNADLRRQQLSVLGAVLLLAALVAWLGVMITRSVSVPVQASVAMAGRVAN 359 + + +L A+ +R + L + + LLAA W+ V ITR+ + + +V + ++ Sbjct: 297 FDLMRDELQAKIPRVRNELLMLCALLGLLAAAALWVMVAITRATTSAINDAVRLTEAISA 356 Query: 360 YDLTARATVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRR 419 DLT + G DE A+LL ++ MT L +V VR++ E + AS +IA GNADLS+R Sbjct: 357 GDLTQHVQINGSDEVARLLTAMQAMTARLSTVVSSVRSNSESVATASAQIAQGNADLSKR 416 Query: 420 TESQASSLEETASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQI 479 TE QAS+L++TA++ME+L STV NA ARQA LA A+ +A +GGQVV VV TM + Sbjct: 417 TEEQASALQQTAASMEELGSTVAQNADGARQAGDLAREAAHVAGQGGQVVQQVVQTMQGL 476 Query: 480 RDSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAA 539 SS RI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AA Sbjct: 477 HASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAA 536 Query: 540 KEIKQLISDSVERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVN 599 +EIK+LI+ SVE+V G QL D+AG TM EIV S+R+V+ IM I A+ EQ+ GI+QV Sbjct: 537 REIKELITASVEQVGQGTQLADQAGKTMEEIVTSIRRVSDIMVGINAATAEQNTGIAQVG 596 Query: 600 DAIAQMEGITQQNAALVEEAAAAAESLQQQAELLWDAVSVFRIQEDA 646 A+ QM+ TQQNAALVEE+AAAA SL QA L AV+VFR+ + A Sbjct: 597 QAVTQMDTTTQQNAALVEESAAAAISLSGQARELVQAVAVFRLGQRA 643 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 356 bits (913), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 221/356 (62%), Positives = 270/356 (75%), Gaps = 12/356 (3%) Query: 323 GAV-LLLAALVAW-LGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLLGS 380 GA+ L+LA L+AW L ITR +++ VQ +A RVA+ DLTAR V+ RDE+ LLG+ Sbjct: 199 GAIALMLAVLLAWWLANNITRPLALAVQ----LARRVASGDLTARIEVRSRDETGALLGA 254 Query: 381 LNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQLTST 440 L DM SL IV VR E+I AS EIATGN DLS RTE QASSLEETAS+ME+LTST Sbjct: 255 LKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEETASSMEELTST 314 Query: 441 VQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAFQT 500 VQ N +AR+A+++A +AS +A GG VV VVDTM +I DSSR+IVDIISVIDGIAFQT Sbjct: 315 VQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDIISVIDGIAFQT 374 Query: 501 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQLV 560 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LISDSV +VE+G LV Sbjct: 375 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLV 434 Query: 561 DEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEEAA 620 +EAG TM EIV SV++V +++EI+ A EEQ +GI QV+ A+ QM+ +TQQNAALVE+AA Sbjct: 435 NEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAA 494 Query: 621 AAAESLQQQAELLWDAVSVFRIQE----DAAHQPRQPQAVSQPHAAVSD-TREGRL 671 AA++SLQ+QA+ L AVSVFR++ + A +P P +V+ + V TR RL Sbjct: 495 AASQSLQEQAQELAQAVSVFRLEAGQALEVAPEP-APASVAASRSGVRPATRSSRL 549 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 355 bits (912), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 217/341 (63%), Positives = 258/341 (75%), Gaps = 6/341 (1%) Query: 309 AQNADLR--RQQLSVLGAV-LLLAALVAWLGVMITRSVSVPVQASVAMAGRVANYDLTAR 365 A N D R R L LGA+ ++L A +AWL +TRS++ P+ +V +A VA DLT+R Sbjct: 178 AINRDYRSGRSMLLALGAIEIVLGAALAWL---LTRSITRPLNQAVTIAETVAAGDLTSR 234 Query: 366 ATVQGRDESAQLLGSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQAS 425 RDE+ +LL +L M +L IVGRVR E I ASREIATGN DLS RTE+QA Sbjct: 235 IDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAG 294 Query: 426 SLEETASAMEQLTSTVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRR 485 SLEETASAMEQLTSTV+ NA +ARQA++LA+SASQ+A +GG VV VV TM I SS++ Sbjct: 295 SLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQK 354 Query: 486 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQL 545 I DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIKQL Sbjct: 355 IADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQL 414 Query: 546 ISDSVERVETGGQLVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQM 605 I DSVE+V+ G +LV AG TM E+V SV +V ++ EIT AS+EQS+GI QVN AI + Sbjct: 415 IDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHI 474 Query: 606 EGITQQNAALVEEAAAAAESLQQQAELLWDAVSVFRIQEDA 646 + TQQNAALVE+AAAAA S+Q QA L DAVSVFR+++DA Sbjct: 475 DETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDA 515 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 347 bits (889), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 211/332 (63%), Positives = 255/332 (76%), Gaps = 3/332 (0%) Query: 319 LSVLGAVLLLAALVAWLGVMITRSVSVPVQASVAMAGRVANYDLTARATVQGRDESAQLL 378 L + G +LL+AL A L ITRS++ P+ +V +A VA DLT + +DE+ LL Sbjct: 194 LVLSGVAVLLSALCAML---ITRSITRPLNEAVQVATAVAAGDLTVQIEATSKDETGALL 250 Query: 379 GSLNDMTHSLGGIVGRVRTSIEVIQHASREIATGNADLSRRTESQASSLEETASAMEQLT 438 G+L M +L IV VR + I ASREIATGN DLS RTE QA +LEETASAME+LT Sbjct: 251 GALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASAMEELT 310 Query: 439 STVQNNAHSARQADQLASSASQLAERGGQVVGNVVDTMAQIRDSSRRIVDIISVIDGIAF 498 STV+ NA +ARQA+ LA +ASQ+A +GG VVG VV TM QI D+SR+IVDIISVIDGIAF Sbjct: 311 STVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVIDGIAF 370 Query: 499 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKQLISDSVERVETGGQ 558 QTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI SVERVE+G + Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVERVESGSR 430 Query: 559 LVDEAGATMHEIVGSVRQVAGIMSEITQASEEQSNGISQVNDAIAQMEGITQQNAALVEE 618 LV +AGATM E+V SV++V +++EIT AS EQS+GI Q+N AI QM+ +TQQNAALVE+ Sbjct: 431 LVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEQ 490 Query: 619 AAAAAESLQQQAELLWDAVSVFRIQEDAAHQP 650 AAAAA+SLQ+Q+ L D V +FR+ D AHQP Sbjct: 491 AAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQP 522 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,475,613 Number of extensions: 50065 Number of successful extensions: 591 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 71 Length of query: 674 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 582 Effective length of database: 1,184,250 Effective search space: 689233500 Effective search space used: 689233500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)