BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1050.p
         (749 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310574|ref|YP_003774666.1| catalase [Herbaspirillum serope...  1400   0.0  

>gi|300310574|ref|YP_003774666.1| catalase [Herbaspirillum
           seropedicae SmR1]
          Length = 748

 Score = 1400 bits (3625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/748 (93%), Positives = 720/748 (96%)

Query: 1   MSNEAKCPFNHTAGGGTSNRDWWPKQLRLDLLSQHSSKSNPMGEDFNYADAFKSLDLAAV 60
           MSNEAKCPFNHTAG GTSNRDWWPKQLR+DLL+QHSSKSNPMGEDF+YA+AFKSLDLAAV
Sbjct: 1   MSNEAKCPFNHTAGSGTSNRDWWPKQLRVDLLAQHSSKSNPMGEDFDYAEAFKSLDLAAV 60

Query: 61  KADLAKVMTDSQDWWPADFGHYGPLFVRMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP 120
           KADLAKVMTDSQDWWPADFGHYGPLFVRMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP
Sbjct: 61  KADLAKVMTDSQDWWPADFGHYGPLFVRMAWHSAGTYRIGDGRGGAGRGQQRFAPLNSWP 120

Query: 121 DNVNLDKARRLLWPVKQKYGNKLSWADLLILTGNVALETMGFKTFGFAGGRQDVWEPDLD 180
           DNVNLDKARRLLWPVKQKYGNK+SWADLLILTGNVALETMGFKTFGFAGGR DVWEPDLD
Sbjct: 121 DNVNLDKARRLLWPVKQKYGNKISWADLLILTGNVALETMGFKTFGFAGGRADVWEPDLD 180

Query: 181 VYWGNETTWLGGDDRYGKGKAGASHGEIPADADRHGNEQSRTAPAGRNLENPLAAVQMGL 240
           VYWG E+TWLGGDDRYGKGK  +S GEIPADA RHG EQ+RTAPAGRNLENPLAAVQMGL
Sbjct: 181 VYWGTESTWLGGDDRYGKGKGSSSQGEIPADAHRHGQEQARTAPAGRNLENPLAAVQMGL 240

Query: 241 IYVNPEGPDGNPDPLAAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE 300
           IYVNPEGP+GNPDPLAAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE
Sbjct: 241 IYVNPEGPEGNPDPLAAAHDIRETFARMAMDDEETVALIAGGHTFGKTHGAGDAKHVGRE 300

Query: 301 PEGEGLESQGLGWKSSFGSGAAGDTISSGLEVTWTQTPAQWSNYFFENLFNYEWELTKSP 360
           PEGE ++SQGLGWKSSFGSG  GDTISSGLEVTWTQTPAQWSNYFFENLF YEWELTKSP
Sbjct: 301 PEGEDMDSQGLGWKSSFGSGVGGDTISSGLEVTWTQTPAQWSNYFFENLFKYEWELTKSP 360

Query: 361 AGAHQWVAKNAQAVIPHAHGGAALLPTMLTTDLSLRFDPAYEKISRRFLAHPEQFADAFA 420
           AGAHQWVAK A AVIPHAHGGA LLPTMLTTDLSLRFDPAYEKISRRFL HPEQFADAFA
Sbjct: 361 AGAHQWVAKGADAVIPHAHGGAPLLPTMLTTDLSLRFDPAYEKISRRFLEHPEQFADAFA 420

Query: 421 RAWFKLTHRDLGPRSRYLGPEVPAEELIWQDPLPQAQGAAIDAADVSALKAKVLASGLSV 480
           RAWFKLTHRDLGPRSRYLGPEVPAEELIWQDPLPQA+GA IDAADV+ALKAKVL SGLSV
Sbjct: 421 RAWFKLTHRDLGPRSRYLGPEVPAEELIWQDPLPQAEGAQIDAADVAALKAKVLGSGLSV 480

Query: 481 AELVSTAWASASTFRGGDMRGGANGARIRLAPQKDWAANQPAQLAKVLKALEAIQAEFNQ 540
            ELV+TAWASASTFRGGDMRGGANGARIRLAPQKDWAANQPAQLAKVLK LE IQ+ FNQ
Sbjct: 481 PELVATAWASASTFRGGDMRGGANGARIRLAPQKDWAANQPAQLAKVLKTLEGIQSAFNQ 540

Query: 541 GSKKVSLADLIVLAGSAAVEKAAKDAGVAVSVPFSAGRVDASQEQTDAASFAPLEPVIDG 600
           G KKVSLADLIVLAGSAAVEKAA+DAGVAV+VPF AGRVDASQEQTDAASFAPLEP++DG
Sbjct: 541 GGKKVSLADLIVLAGSAAVEKAAQDAGVAVAVPFRAGRVDASQEQTDAASFAPLEPIVDG 600

Query: 601 FRNFQKQRYAVRGEDMLIDKAQQLTLTAPEMTVLIGGLRVLGNTVGGSTKGVFTSRVGVL 660
           FRNFQKQRYAVRGEDMLIDKAQQLTL+APEMTVL+GGLRVLGN VGGSTKG+FT RVGVL
Sbjct: 601 FRNFQKQRYAVRGEDMLIDKAQQLTLSAPEMTVLVGGLRVLGNNVGGSTKGMFTDRVGVL 660

Query: 661 SNDFFVNLLDMGTEWKSTSPAQEEFEGRDRKTGALKWTGTRVDLVFGSNAVLRALAEVYA 720
           SNDFFVNLLDM TEWKSTSPAQEEFEGRDRKTGA+KW GTRVDLVFGSNAVLRALAEVYA
Sbjct: 661 SNDFFVNLLDMATEWKSTSPAQEEFEGRDRKTGAVKWAGTRVDLVFGSNAVLRALAEVYA 720

Query: 721 SADAKEKFVKDFVAAWVKVMELDRFDLK 748
           SADAKEKFVKDFVAAWVKVMELDRFDLK
Sbjct: 721 SADAKEKFVKDFVAAWVKVMELDRFDLK 748


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,569,077
Number of extensions: 116444
Number of successful extensions: 343
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 657
Effective length of database: 1,184,250
Effective search space: 778052250
Effective search space used: 778052250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 134 (56.2 bits)