BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1047.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310571|ref|YP_003774663.1| transmembrane protein [Herbaspi...   541   e-155
gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme p...    73   3e-14

>gi|300310571|ref|YP_003774663.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  541 bits (1393), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 269/285 (94%), Positives = 277/285 (97%)

Query: 1   MSTSIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL 60
           M+ SIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL
Sbjct: 1   MNASIDLNDIDYERRFGGVARLYGAAALQRFRQARVCVVGVGGVGSWIVEALARSAIGHL 60

Query: 61  TLIDLDNLAESNVNRQIHALTGTLGQAKVTALHERISQINPTCVVTEVEDFVDPENVEQM 120
           TL+DLDNLAESNVNRQIHALT TLGQAKVTALHERI QINPTCVVTEVEDFVDP+NVE+M
Sbjct: 61  TLVDLDNLAESNVNRQIHALTTTLGQAKVTALHERIRQINPTCVVTEVEDFVDPDNVEKM 120

Query: 121 LGGGRFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP 180
           LGG RFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP
Sbjct: 121 LGGERFDYVIDAIDNVPAKVAMIAWCRKNGMPMVTIGSAGGQIDPTQIEIRDLCRTEQEP 180

Query: 181 LLAKVRKRLRSQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEVVPAEDMDVGADAA 240
           LLAKVRKRLR+QHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACE+ PAED+DVG DAA
Sbjct: 181 LLAKVRKRLRAQHGFPRGTKNKFHIDAVFSTEPLRFPELAEGEACEIAPAEDIDVGEDAA 240

Query: 241 DSTQAGVTGLNCAGFGSAMVVTATFGLVAAAHVLKKLAEQANTQP 285
           DSTQAGVTGLNCAGFGSAMVVTA+FGLVAAAHVLKKLAEQA  QP
Sbjct: 241 DSTQAGVTGLNCAGFGSAMVVTASFGLVAAAHVLKKLAEQAAAQP 285


>gi|300309508|ref|YP_003773600.1| dinucleotide-utilizing enzyme
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 9/144 (6%)

Query: 30  RFRQARVCVVGVGGVGSWIVEALARSAIGHLTLIDLDNLAESNVNRQIHALTGTLGQAKV 89
           R  Q    V+G GG+GS     LA + +G +TL+D D +  +N+ RQI   T  +GQ KV
Sbjct: 25  RLLQGHALVIGAGGLGSPAAMYLASAGVGRITLVDHDTVDLTNLQRQIMHTTARVGQPKV 84

Query: 90  TALHERISQINPTCVVTEVEDFVDPENVEQMLGGGRFDYVIDAIDNVPAKVAMIAWCRKN 149
            +  + + QINP   VT + + V+ E +  ++   + D V+D  DN   + A+   C   
Sbjct: 85  ESGRQALEQINPGVQVTALAERVEAERLHALV--AQADVVLDCSDNFATRHAVNRACVAA 142

Query: 150 GMPMVTIGSA---GGQI---DPTQ 167
           G+P+V+ G+A    GQ+   DP Q
Sbjct: 143 GVPLVS-GAAIRFDGQVSVFDPRQ 165


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 809,221
Number of extensions: 31926
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)