BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1043.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310567|ref|YP_003774659.1| chromate efflux protein [Herbas...   480   e-137
gi|300312749|ref|YP_003776841.1| chromate transport protein [Her...    65   1e-11

>gi|300310567|ref|YP_003774659.1| chromate efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 482

 Score =  480 bits (1236), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 294/389 (75%), Positives = 321/389 (82%), Gaps = 5/389 (1%)

Query: 4   TTTAPSPREP-----IWPLFLVFLRLGLTSFGGPAAHLGYFRQEFVARRHWLSEQTYADL 58
           + TA  PR        W +FLVFLRLGLTSFGGPAAHLGYFR EFVARR WLSE  YADL
Sbjct: 77  SVTANQPRASGSPGACWEVFLVFLRLGLTSFGGPAAHLGYFRTEFVARRGWLSEAAYADL 136

Query: 59  VAMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGFTLPSAVLLMVVALSVLSDARWLSG 118
           VAMCQFLPGPSSSQVG+AIG++R GY GALAAWLGFTLPSA+LLM +ALSVL  A WLS 
Sbjct: 137 VAMCQFLPGPSSSQVGMAIGVLRAGYGGALAAWLGFTLPSALLLMGLALSVLQQAHWLSA 196

Query: 119 EVVHGLKIVAVAIVAQAVWGMAQTLCRGPQRLLIMILAALATGLLHGSLVQLGVIVLAGL 178
           EVVHGLKIVAVAIVAQAVWGMA +LCRG QR +I + AALA  L+ G+L QL +IV A L
Sbjct: 197 EVVHGLKIVAVAIVAQAVWGMAGSLCRGLQRQVITLAAALAALLMSGALAQLAIIVTAAL 256

Query: 179 AGRLLLHGPQMTLQEQLPLVVSRRAGRACLLLFFVLLAGIPLLASLYPAPWLQQVNIFYR 238
           AG LLL        + LP  ++RR G ACLLLF  LL GIP LA+ +PA WLQ  +IFYR
Sbjct: 257 AGWLLLKSVPTARLDDLPPTLNRRVGAACLLLFLGLLLGIPALAAWHPASWLQLTSIFYR 316

Query: 239 VGSLVFGGGHVVLPLLQAELVPTGWVDKDVFLAGYGAAQAVPGPLFTLAAYLGVVMSSWP 298
           VGSLVFGGGHVVLPLLQAELVP GW+DKDVFLAGYGAAQAVPGPLFTLAAYLGVVMSSWP
Sbjct: 317 VGSLVFGGGHVVLPLLQAELVPAGWLDKDVFLAGYGAAQAVPGPLFTLAAYLGVVMSSWP 376

Query: 299 NGVTGGVLCLLAIFAPSFLLVTGLLPFWDEVRRQRAMQAALAGVNAAVVGLLLAALYQPV 358
           NGV GG+LCL+AIF PSFLLV GLLPFWD VRR   MQAALAGVNAAVVGLLLAALYQPV
Sbjct: 377 NGVAGGLLCLVAIFTPSFLLVIGLLPFWDSVRRNGPMQAALAGVNAAVVGLLLAALYQPV 436

Query: 359 WTSAIFNGRDLLIALAAFAALVWLKLPSW 387
           WTSAI + RDLL+ALAA AALV+L++PSW
Sbjct: 437 WTSAIHSLRDLLVALAALAALVYLRMPSW 465


>gi|300312749|ref|YP_003776841.1| chromate transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 65/110 (59%), Gaps = 11/110 (10%)

Query: 1   MSTTTTAPSPREPI---WPLFLVFLRLGLTSFGG--PAAHLGYFRQEFVARRHWLSEQTY 55
           M +T    +P  P+     LFL FL LG+T+FGG  P AH     +  V RR WL++  +
Sbjct: 13  MMSTPDLLAPERPVPTTRELFLGFLGLGMTAFGGALPLAH-----RMIVERRKWLTDPEF 67

Query: 56  ADLVAMCQFLPGPSSSQVGLAIGLIRGGYRGALAAWLGF-TLPSAVLLMV 104
            +L+ +CQFLPG +   + +A+G+   G++GALA   G   +PS V++++
Sbjct: 68  VELLGLCQFLPGGNIINLSVALGMKFRGWKGALAGVTGLIAVPSMVVILL 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,107,840
Number of extensions: 45069
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 3
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)