BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1019.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR repeatcontai...   385   e-108
gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1 sub...    71   1e-13

>gi|300310332|ref|YP_003774424.1| SEL1 subfamily TPR
           repeatcontaining protein [Herbaspirillum seropedicae
           SmR1]
          Length = 328

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/292 (68%), Positives = 241/292 (82%)

Query: 24  RDLGQALVGADQALAAKDYASAHALYSRAAADNPLAQFNLGLFEREGWGRPSDLVAACRW 83
           RDLG  L  A++ALAAKDY+ A+AL++R AA+NPLAQF+LGLFEREGWGR S+ VAAC W
Sbjct: 32  RDLGAELTTANKALAAKDYSRAYALFARHAANNPLAQFSLGLFEREGWGRTSNPVAACNW 91

Query: 84  FEKAAQANIPAAQQFLGDCYAGGVGRAADGAAAIRWYVKAAQSGIAYAWCSAGEIYIEGR 143
           FEKAA +NIPAAQQFLGDC A G+GR  DG AA  WY KAA SGIAYA CSAGE+YIEG+
Sbjct: 92  FEKAAHSNIPAAQQFLGDCLAKGIGREVDGKAAESWYRKAAASGIAYALCSAGELYIEGK 151

Query: 144 LLPRNLEQGLALCVRAAQADSSPAMLRLGDYFREGRQVPPDLERARYWYQQAAERHNLAA 203
            L +++++GLALC+ AAQADS+PAMLRL DY+R+G+ VP +L  ARYWY+QAA+RH   A
Sbjct: 152 TLEKDVDRGLALCLAAAQADSAPAMLRLADYYRDGKDVPQNLVAARYWYEQAAQRHQHEA 211

Query: 204 QFHLGLMLSQGEGGQADPRLALFWLERAASEGYAPAYLPVAVLYANAAPDPATGALSADQ 263
           Q+ LG+M+S+G GG  D   ALFWLE AA EGY PAYLPVA+LYANA+PDP TG LS + 
Sbjct: 212 QYRLGIMMSEGHGGDVDIPSALFWLEHAAMEGYRPAYLPVAILYANASPDPKTGMLSPEN 271

Query: 264 LARIYMWNSAAKATTKDADQQAQIERIAQLVLAVMPPAWRPELDRRVAEHLA 315
           LA++YMWNSAAKA T +A Q A+IERI ++VLAVMPP W+P+LDR+VAEHLA
Sbjct: 272 LAKVYMWNSAAKARTTNAVQLAEIERIEKMVLAVMPPQWQPDLDRKVAEHLA 323


>gi|300313663|ref|YP_003777755.1| TPR repeat containing, SEL1
           subfamily protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 87/183 (47%), Gaps = 8/183 (4%)

Query: 51  RAAADN--PLAQFNLGLFEREGWGRPSDLVAACRWFEKAAQANIPAAQQFLGDCYAGGVG 108
           RAAA    P AQ  LG     G G  +D   A  W E AAQA+   A   +G C   G G
Sbjct: 37  RAAASQSVPRAQAILGQRLLFGEGCAADAGEAVHWLELAAQADDLHAINLMGRCCEHGWG 96

Query: 109 RAADGAAAIRWYVKAAQSGIAYAWCSAGEIYIEGRLLPRNLEQGLALCVRAAQADSSPAM 168
           R  D   A+ WY  AA  G+ +   +   + + G  +  +    L+   RAA    + ++
Sbjct: 97  RQRDTTMAVYWYRLAASRGLDWGMYNLANLMMSGAGVDVDRATALSWYRRAADMGHAKSI 156

Query: 169 LRLGDYFREGRQVPPDLERARYWYQQAAERHNLAAQFHLG-LMLSQGEGGQADPRLALFW 227
             LG +F EG +V  DLERA   Y+QAA   +   QF+   L+L++G+       LAL W
Sbjct: 157 NVLGRFFEEGWEVATDLERAFALYRQAALGGDFRGQFNYSRLLLARGQRA-----LALEW 211

Query: 228 LER 230
           L R
Sbjct: 212 LRR 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 996,761
Number of extensions: 39240
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)