BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1014.p
         (337 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310280|ref|YP_003774372.1| dienelactone hydrolase [Herbasp...   214   9e-57
gi|300311783|ref|YP_003775875.1| dienelactone hydrolase [Herbasp...   150   1e-37

>gi|300310280|ref|YP_003774372.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  214 bits (545), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/266 (40%), Positives = 160/266 (60%), Gaps = 4/266 (1%)

Query: 75  ESVSSIDVTVKDMYGKQESAKVVITQFKP-AGPGPFPVLILSHGRSPTNRSEPP--RFRY 131
           E    + V++K+MYGK    K+ +T ++  A P P P+L+L+HGR+          R R+
Sbjct: 42  EQQIDVPVSLKNMYGKPVEQKMRVTIWRDDANPAPAPILVLNHGRAAEAAGRANLGRARF 101

Query: 132 TKQVRYFVERGFAVFEPTRIGYGAAMTQFDPEDSGSCSSKDYAPMATAGSTEILAVLDYA 191
           T   R+FV  GF V  PTR+GYG      D ED+G C+S+ Y P+  A + + +A ++  
Sbjct: 102 TVASRFFVRYGFVVAVPTRVGYGVTGGD-DLEDAGGCNSRFYPPVYEAAAQQTIATINAV 160

Query: 192 RQQPYVDAKRVLLVGQSVGGYLTVATTARNPAGLVGAINFAGGSGGDPEKRPGNPCAPER 251
           +  P  D  RV++VGQS GG   +   +    GL  AINFAGG GG+P+  P  PC P++
Sbjct: 161 KALPGTDGARVVVVGQSFGGTTAITVASHQVPGLKAAINFAGGGGGNPKTHPQQPCGPQK 220

Query: 252 LEQMYAQFGQQAKAPMLWIYTENDLYFSPTHSKAWYDAFVKAGGTAQYRLLPPFAKNGHT 311
           LEQM+  +G+ ++ P LWIYTEND +  PT+ + W++AF  AGG  ++ L PP  ++GH 
Sbjct: 221 LEQMFGDYGKSSQVPTLWIYTENDQWMGPTYPRQWFNAFQAAGGKGEFVLFPPHGEDGHL 280

Query: 312 LFAAGTEIWEPIVGEFLDKLGFVSPR 337
           LFA   + W+P V EFL++ GF + R
Sbjct: 281 LFARFPQSWQPRVAEFLEQQGFTAHR 306


>gi|300311783|ref|YP_003775875.1| dienelactone hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/244 (37%), Positives = 126/244 (51%), Gaps = 14/244 (5%)

Query: 93  SAKVVITQFKPAGPGPFPVLILSHGRSPTNRSEPPRFRYTKQVRYFVERGFAVFEPTRIG 152
           S K+  T F+P G GPFP+LI++HG+SP N +  PR R       FV RG+AV  P R G
Sbjct: 61  SVKLETTLFRPPGEGPFPLLIINHGKSPGNPAFQPRGRSVVMATEFVRRGYAVLLPMRKG 120

Query: 153 YGAAMTQFDPEDSGSCSSKDYAPMATAGSTEILAVLDYARQQPYVDAKRVLLVGQSVGGY 212
           +  +   +     G C+ +       A + ++ A LDYARQQ +VD  RV+++GQS GG 
Sbjct: 121 FSRSGGMY---VDGGCNIRGN---GEAQADDLQAALDYARQQAWVDKDRVIIMGQSHGGL 174

Query: 213 LTVATTARNPAGLVGAINFAGGSGGDPEKRPGNPCA-PERLEQMYAQFGQQAKAPMLWIY 271
            T+A   RNP G+   +NFAGG   D        C     L   +  FG + + P LW Y
Sbjct: 175 TTMAFGERNPPGVRALLNFAGGLRYD-----ATGCIWKSALVDAFGVFGSRTRIPSLWFY 229

Query: 272 TENDLYFSPTHSKAWYDAFVKAGGTAQYRLLPPFAKNGHTLFAA--GTEIWEPIVGEFLD 329
            END YF+P  +   Y+A+ KAGG A      PF  + H +  +  G  IW P     L 
Sbjct: 230 GENDSYFNPELAARMYEAYTKAGGPATLVAFGPFKSDAHGMSGSRDGIPIWWPPTEALLK 289

Query: 330 KLGF 333
           ++G 
Sbjct: 290 QVGM 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,163,200
Number of extensions: 50964
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 2
Length of query: 337
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,212,660
Effective search space: 304377660
Effective search space used: 304377660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)