BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1010.p (270 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Her... 532 e-152 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 211 5e-56 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 185 3e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 182 3e-47 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 182 4e-47 >gi|300310542|ref|YP_003774634.1| nitrate transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 532 bits (1371), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/270 (94%), Positives = 266/270 (98%) Query: 1 MDNLNGKFIDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAG 60 MDN+NGKFIDIHGVEM+FHTKKG FHALREINLTVAKG+FVTLIGHSGCGKSTLLNLIAG Sbjct: 3 MDNINGKFIDIHGVEMLFHTKKGVFHALREINLTVAKGEFVTLIGHSGCGKSTLLNLIAG 62 Query: 61 LLQPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLR 120 LL+PSEGVLLCANREIGGPAPERAVVFQNHSLLPWL+CYENIYLGVERVFGA+ENRTQLR Sbjct: 63 LLKPSEGVLLCANREIGGPAPERAVVFQNHSLLPWLSCYENIYLGVERVFGATENRTQLR 122 Query: 121 DRTRAALALVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 180 DRTRAALALVGL+AAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH Sbjct: 123 DRTRAALALVGLSAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAH 182 Query: 181 LQDELLKIVAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRDRVM 240 LQDELLKIVAKT+STVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEV LARPRDRV+ Sbjct: 183 LQDELLKIVAKTDSTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVKLARPRDRVV 242 Query: 241 LAQDAQYGQYRTTVLEFLYRKQAHPAREAA 270 LAQD +YGQYRT VLEFLYRKQAHPAREAA Sbjct: 243 LAQDPEYGQYRTAVLEFLYRKQAHPAREAA 272 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 211 bits (537), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 109/229 (47%), Positives = 149/229 (65%), Gaps = 4/229 (1%) Query: 9 IDIHGVEMVFHTKKGAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGV 68 I I GV VF T AL++INL + GQFV L+G SGCGKSTLLN IAG PS G Sbjct: 10 IRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQ 69 Query: 69 LLCANREIGGPAPERAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALA 128 +L ++ + P P+R +VFQ ++L PW+T +N+ G+E + G + ++ R L Sbjct: 70 ILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLE-IKGTP--KAEIHQRVTQLLD 126 Query: 129 LVGLTAAENKRPNEISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKI 188 +GL + P ++SGGM+QRV IAR LA++ ++LMDEPFGALDALTR +LQDELL+I Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 189 VAKTESTVVMVTHDVDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRD 237 + T+V VTH ++EA+ L+DRIV+MT P T+ + VNL R RD Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRP-GTVKRDMLVNLPRLRD 234 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 185 bits (470), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/215 (44%), Positives = 135/215 (62%), Gaps = 3/215 (1%) Query: 23 GAFHALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGVLLCANREIGGPAPE 82 G H + E +A G+ V L+G SGCGKSTLL++ AGL +PS G + + I GP PE Sbjct: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGSVAGDGQTIRGPHPE 72 Query: 83 RAVVFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAENKRPNE 142 R ++FQ ++L PWLT +N+ L +E S ++ + ++ R L V L E+ P++ Sbjct: 73 RTLMFQENALYPWLTLQQNVALALEF---QSVDKKKAAEQARVWLENVKLKGFEHYYPHQ 129 Query: 143 ISGGMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHD 202 +SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L ++ + TVV+VTHD Sbjct: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRDLIRQQGPTVVLVTHD 189 Query: 203 VDEAVLLSDRIVMMTNGPAATIGEVLEVNLARPRD 237 VDEA+ L+DRI + + PA + E V+ + D Sbjct: 190 VDEALFLADRIFVFSPRPAKVLKEFNLVHHEKTHD 224 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 182 bits (461), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 131/209 (62%), Gaps = 4/209 (1%) Query: 26 HALREINLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGVLLCANREIGGPAPERAV 85 HAL ++L + G FV +G SGCGKSTLLN +AG L SEG + + + GP ER V Sbjct: 20 HALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGV 79 Query: 86 VFQNHSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAENKRPNEISG 145 VFQ SLLPW + +N+ LG++ A +++ R+R + L LVGL P E+SG Sbjct: 80 VFQKDSLLPWKSVQDNVALGLKF---AGVSKSDSRERAQELLRLVGLQDFARAAPYELSG 136 Query: 146 GMKQRVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDE 205 GM+QRVG+ARALA PK+LLMDEPFGALD++TR +Q+ L+ + A+T V +TH ++E Sbjct: 137 GMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEE 196 Query: 206 AVLLSDRIVMMTNGPAATIGEVLEVNLAR 234 A+ L +++M+ P + E + R Sbjct: 197 ALFLGTEVIVMSPRPGRIVAR-FETDFVR 224 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 5/225 (2%) Query: 31 INLTVAKGQFVTLIGHSGCGKSTLLNLIAGLLQPSEGVLLCANREIGGPAPERAVVFQN- 89 I+L + G+FV L+G SGCGKSTLLN IAG Q G + + + GP +R VVFQ+ Sbjct: 25 IDLDIRAGEFVCLLGPSGCGKSTLLNAIAGF-QDVSGEISVDGKRVKGPGLDRGVVFQSS 83 Query: 90 HSLLPWLTCYENIYLGVERVFGASENRTQLRDRTRAALALVGLTAAENKRPNEISGGMKQ 149 +L PWL+ EN+ G+ ++ G + + ++LVGL A +K P E+SGGM+Q Sbjct: 84 EALFPWLSVRENVEYGL-KLRGVASAERRAA--AERYVSLVGLKHAIDKFPAELSGGMRQ 140 Query: 150 RVGIARALAMEPKVLLMDEPFGALDALTRAHLQDELLKIVAKTESTVVMVTHDVDEAVLL 209 R IAR L EP V+LMDEPFGALDA TR LQ EL +I T T+V VTHD+ EA+LL Sbjct: 141 RAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWEAILL 200 Query: 210 SDRIVMMTNGPAATIGEVLEVNLARPRDRVMLAQDAQYGQYRTTV 254 +DR+V MT GP A I + EV+L PRD A A Y + R + Sbjct: 201 ADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYARIRDDI 245 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 805,626 Number of extensions: 31630 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 141 Length of query: 270 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 186 Effective length of database: 1,222,130 Effective search space: 227316180 Effective search space used: 227316180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)