BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1005.p
         (71 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310401|ref|YP_003774493.1| hypothetical protein Hsero_1068...    62   9e-12
gi|300310537|ref|YP_003774629.1| hypothetical protein Hsero_1204...    60   5e-11

>gi|300310401|ref|YP_003774493.1| hypothetical protein Hsero_1068
          [Herbaspirillum seropedicae SmR1]
          Length = 71

 Score = 62.0 bits (149), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 35/47 (74%)

Query: 1  MNTLQKLAVSTVAICAFATLTGCSNMSQRDKNTAIGAGVGAVGGAVL 47
          M TL K+A  +V   A   +TGCSNMS RDKNTAIGA VGAVGGA+L
Sbjct: 1  MKTLHKIAAISVTAIALTAMTGCSNMSTRDKNTAIGATVGAVGGAIL 47


>gi|300310537|ref|YP_003774629.1| hypothetical protein Hsero_1204
          [Herbaspirillum seropedicae SmR1]
          Length = 71

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 67/71 (94%)

Query: 1  MNTLQKLAVSTVAICAFATLTGCSNMSQRDKNTAIGAGVGAVGGAVLTGGSGLGTVGGAA 60
          M T+QKLAV+++AI AF+ +TGCSNMSQRDKNTAIGAG GAVGGA+LTGGSGLGTVGGAA
Sbjct: 1  MKTIQKLAVTSLAIFAFSAMTGCSNMSQRDKNTAIGAGAGAVGGAILTGGSGLGTVGGAA 60

Query: 61 VGGVIGNQVGK 71
          VGGVIGNQVGK
Sbjct: 61 VGGVIGNQVGK 71


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 66,727
Number of extensions: 636
Number of successful extensions: 7
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 71
Length of database: 1,619,870
Length adjustment: 43
Effective length of query: 28
Effective length of database: 1,416,265
Effective search space: 39655420
Effective search space used: 39655420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)