BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0999.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310531|ref|YP_003774623.1| periplasmic or secreted lipopro...   206   4e-55
gi|300314015|ref|YP_003778107.1| hyperosmotically inducible peri...    62   9e-12

>gi|300310531|ref|YP_003774623.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score =  206 bits (523), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 102/109 (93%), Positives = 106/109 (97%)

Query: 1   MSLTKMSLTKRFLGFFLALFMVSLVGCASSPGKEGTGEYVDDAVITTKVKAAIFNEPNLK 60
           MSLTKMSLTKRF+GFFLALFMVSLVGCAS P KEGTGEYVDDAVITTKVKAAIFNE +LK
Sbjct: 1   MSLTKMSLTKRFIGFFLALFMVSLVGCASGPNKEGTGEYVDDAVITTKVKAAIFNEKDLK 60

Query: 61  SSEINVETYKGVVQLSGFVSSSTSAARATELARGVKGVVSVRNDLRLKQ 109
           S+EINVETYKGVVQLSGFVSSST+AARATELARGVKGVVSVRNDLRLKQ
Sbjct: 61  STEINVETYKGVVQLSGFVSSSTAAARATELARGVKGVVSVRNDLRLKQ 109


>gi|300314015|ref|YP_003778107.1| hyperosmotically inducible
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 62.4 bits (150), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 46/72 (63%)

Query: 37  GEYVDDAVITTKVKAAIFNEPNLKSSEINVETYKGVVQLSGFVSSSTSAARATELARGVK 96
           G Y+DD+VIT KVKAA+  +  + + +INV T  GVV L G V S+     A +L  G++
Sbjct: 39  GAYIDDSVITAKVKAALVEDKQVSAMKINVTTKDGVVTLKGSVPSAELGQHALQLVAGIE 98

Query: 97  GVVSVRNDLRLK 108
           GV  V++DL +K
Sbjct: 99  GVRDVKSDLTVK 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 256,647
Number of extensions: 7912
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)