BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0996.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310528|ref|YP_003774620.1| bacterioferritin [Herbaspirillu...   354   2e-99

>gi|300310528|ref|YP_003774620.1| bacterioferritin [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score =  354 bits (909), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 172/185 (92%), Positives = 179/185 (96%), Gaps = 1/185 (0%)

Query: 1   MTKNPPQTEQSKKPGFHLDKEAIRAAASKIDDGAVTEGYRGNREEVVAMLNDALATELLC 60
           MTKNPPQT+    P FHLDK+AIRAAA+KID+GAVTEGYRGNREEV+AMLNDALATELLC
Sbjct: 3   MTKNPPQTDVKSTP-FHLDKQAIRAAAAKIDEGAVTEGYRGNREEVIAMLNDALATELLC 61

Query: 61  VMRYKRHYYTAKGLEIEAIKGEFLQHAQEEQSHADQIAERIVQLNGEPDFNPQTIAERSH 120
           VMRYKRHYYTAKGLEIEAIKGEFLQHAQEEQSHADQIAERIVQLNGEPDFNP+TIAERSH
Sbjct: 62  VMRYKRHYYTAKGLEIEAIKGEFLQHAQEEQSHADQIAERIVQLNGEPDFNPKTIAERSH 121

Query: 121 AQYDESNDIKDMIRANLVEERVAIEAYRQMIERIGDDDPTTKHLLIQIMAQEEEHADDMS 180
           AQYDES DIKDMIRANLVEERVAIEAYRQMIERIGDDDPTTKH+LIQIMAQEEEHADDMS
Sbjct: 122 AQYDESADIKDMIRANLVEERVAIEAYRQMIERIGDDDPTTKHMLIQIMAQEEEHADDMS 181

Query: 181 DLLGL 185
           DLLGL
Sbjct: 182 DLLGL 186


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 566,995
Number of extensions: 21498
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)