BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0990.p (255 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 506 e-145 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 505 e-144 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 257 7e-70 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 234 4e-63 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 232 3e-62 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 506 bits (1304), Expect = e-145, Method: Compositional matrix adjust. Identities = 247/255 (96%), Positives = 252/255 (98%) Query: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 SFELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 +FEL G+PYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 Query: 121 KAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEP 180 KAAR+EEAAIR KSQ+LLDFVGIGQFAKRTARHLSYGDQRRLEIARALAT+PQLLALDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 181 AAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 AAGMNATEKL LRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 241 QKNPAVIEAYLGAGH 255 QKNPAVIEAYLGAGH Sbjct: 241 QKNPAVIEAYLGAGH 255 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 505 bits (1301), Expect = e-144, Method: Compositional matrix adjust. Identities = 246/255 (96%), Positives = 252/255 (98%) Query: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG Sbjct: 1 MSQTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTG 60 Query: 61 SFELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRH 120 +FEL G+PYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRT+QNVFGAVFRH Sbjct: 61 TFELDGKPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRH 120 Query: 121 KAARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEP 180 KAAR+EEAAIR KSQ+LLDFVGIGQFAKRTARHLSYGDQRRLEIARALAT+PQLLALDEP Sbjct: 121 KAAREEEAAIREKSQKLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATDPQLLALDEP 180 Query: 181 AAGMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 AAGMNATEKL LRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV Sbjct: 181 AAGMNATEKLGLRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADV 240 Query: 241 QKNPAVIEAYLGAGH 255 QKNPAVIEAYLGAGH Sbjct: 241 QKNPAVIEAYLGAGH 255 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 257 bits (656), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 128/248 (51%), Positives = 165/248 (66%) Query: 5 LLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSFEL 64 LL++ D+SK FGGLQ L GV + +G+I+GLIGPNGAGKTT FN+ITGL + +GS Sbjct: 2 LLQLNDISKNFGGLQVLQGVNFNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 Query: 65 AGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAR 124 APH++ + GIARTFQNIR+F EMT+LENV+VG H V + R Sbjct: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFR 121 Query: 125 DEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAAGM 184 + E R ++ +LL +V + A A LSYG+QR+LE ARALAT+P+LL LDEP AGM Sbjct: 122 NAEKEARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGM 181 Query: 185 NATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNP 244 N EK L +V I+ G TI +IEHD++ +MGLC RI VL++GK IAEG P ++ N Sbjct: 182 NPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQ 241 Query: 245 AVIEAYLG 252 VIEAYLG Sbjct: 242 EVIEAYLG 249 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 234 bits (598), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/251 (45%), Positives = 168/251 (66%), Gaps = 1/251 (0%) Query: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSF 62 +T+L++ ++S RFGGL A++GV + ++ +++ +IGPNGAGKTT FN I+G Y+P +G Sbjct: 6 KTMLEVSNLSMRFGGLLAVDGVSLAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEI 65 Query: 63 ELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 L G + H+VA+ G+ RTFQNIRLF MTV+EN++V H + N+ + + A Sbjct: 66 MLDGASIARQPSHQVAQQGLVRTFQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPA 125 Query: 123 ARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAA 182 R E ++ LD +G+ A R A LSYG QRR+EIAR + T+P+LL LDEPAA Sbjct: 126 YRKSEQEALQRAAYWLDQLGLTALANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAA 185 Query: 183 GMNATEKLALRELLVKIQAE-GKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQ 241 G+N EK L +L+ +++ E G +LLIEHD+ L+MG+ +RI V+++GKPI G P V+ Sbjct: 186 GLNPQEKQELSQLIDRLRREHGVAVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVR 245 Query: 242 KNPAVIEAYLG 252 + VI+AYLG Sbjct: 246 SDERVIKAYLG 256 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 232 bits (591), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/250 (47%), Positives = 169/250 (67%), Gaps = 2/250 (0%) Query: 3 QTLLKIRDVSKRFGGLQALNGVGITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGSF 62 + +L +R V+++FGGL A N + + + G++ LIGPNGAGK+T FN I+G+ P +GS Sbjct: 353 EVVLDVRSVTRKFGGLVANNNMSLKVMAGEVLALIGPNGAGKSTLFNQISGVDTPTSGSV 412 Query: 63 ELAGQPYSPSAPHEVAKAGIARTFQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKA 122 + GQ + +A G++R+FQ++RL MTVLENV +G ++R ++ V ++ R Sbjct: 413 QFRGQEVTGRGSRHIAGLGMSRSFQHVRLMPRMTVLENVAIGAYLRGQRGVLASMLRLD- 471 Query: 123 ARDEEAAIRAKSQQLLDFVGIGQFAKRTARHLSYGDQRRLEIARALATEPQLLALDEPAA 182 R EEA I A++ + ++ VG+ A LS G QR LEIARALA +P LL LDEPAA Sbjct: 472 -RKEEARILAEAARQIERVGLKAQMYELAGALSLGQQRILEIARALAADPCLLLLDEPAA 530 Query: 183 GMNATEKLALRELLVKIQAEGKTILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQK 242 G+ EK AL ELL K++ EG ILL+EHD+ +M L +RI V+D+G+ IAEG+PAD+Q Sbjct: 531 GLRLGEKQALAELLRKLRGEGMAILLVEHDMDFVMELVDRIVVMDFGQKIAEGLPADIQN 590 Query: 243 NPAVIEAYLG 252 NPAV+EAYLG Sbjct: 591 NPAVLEAYLG 600 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 804,086 Number of extensions: 34746 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 126 Number of HSP's gapped: 324 Number of HSP's successfully gapped: 143 Length of query: 255 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 172 Effective length of database: 1,226,865 Effective search space: 211020780 Effective search space used: 211020780 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)