BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0981.p
         (358 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310513|ref|YP_003774605.1| small-conductance mechanosensit...   689   0.0  

>gi|300310513|ref|YP_003774605.1| small-conductance mechanosensitive
           channel protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/358 (94%), Positives = 351/358 (98%)

Query: 1   MFPLVIAQVAMRFVFYVLRGIFVKDATVGALLHLSEKLIALLVWLCVVLWITGLWPDFVD 60
           MFPL +AQVAMRFVFYVLRGIFVKDATVGALLHLSEK IA+LVWLCVVLWITGLWPDFVD
Sbjct: 1   MFPLTVAQVAMRFVFYVLRGIFVKDATVGALLHLSEKAIAVLVWLCVVLWITGLWPDFVD 60

Query: 61  YLDSTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR 120
           YLD TTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR
Sbjct: 61  YLDGTTLPLARHKVSLLTMLQGAASVLVTLIIALWIGTVLENRLMKFSGMHSSLRTVVAR 120

Query: 121 MMRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV 180
           M+RALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV
Sbjct: 121 MLRALLILIAFLVSLSLVGIDLTVLSVFGGALGVGIGLGLQKIASSYVSGFVILLERSMV 180

Query: 181 IGDMVAVDKFFGKVTQINTRYTILEGLDGIETVLPNELFVSNPVQNYSLTHRIVRLSTQL 240
           IGDMVAVDK+FGKVTQINTRYTILEGLDGIE+VLPNELFVSNPVQNYSLTHRIVRLSTQL
Sbjct: 181 IGDMVAVDKYFGKVTQINTRYTILEGLDGIESVLPNELFVSNPVQNYSLTHRIVRLSTQL 240

Query: 241 TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLELELGFWITDPENGRLN 300
           TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGL+LELGFWITDPENGRLN
Sbjct: 241 TILYQDDVETVLSIMEQAALGVQRVSQQTAPQALLIKIGADGLDLELGFWITDPENGRLN 300

Query: 301 VLSEVNRAIWAAFKRHGVQVAHPKRDIRIMDERSFRQSTAQENPDGPGTQNSRTMPGN 358
           VLS+VNRAIWAAFK+HG++VAH KRDIRIMDERSFRQST +ENPD PG QNSRTMPGN
Sbjct: 301 VLSDVNRAIWAAFKQHGIEVAHAKRDIRIMDERSFRQSTGKENPDMPGGQNSRTMPGN 358


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 985,367
Number of extensions: 35855
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,212,660
Effective search space: 329843520
Effective search space used: 329843520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)