BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0980.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310512|ref|YP_003774604.1| phosphatidylserine/phosphatidyl...   292   1e-80

>gi|300310512|ref|YP_003774604.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  292 bits (747), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/168 (87%), Positives = 157/168 (93%)

Query: 24  QAREALPAPPVMAAQGTVQSAFAPWDDIEALIVGQLDGARRQILVQAYLLTSRPITDALV 83
           QAREA+P PPVM AQGT+Q AFAPWDD+E LIVGQLDGARRQILVQAYLLTSRPITDALV
Sbjct: 27  QAREAVPPPPVMPAQGTIQPAFAPWDDVEGLIVGQLDGARRQILVQAYLLTSRPITDALV 86

Query: 84  AARKRGIDVRVLMDAGQLDKNATDRLRQLRAAGIPVWLETEYRNAHNKVIVIDAALPTAT 143
           AARKRG+DVRVLMD GQLDKN+ DRL+QLR AGIPVWLET+YRNAHNKVI+IDA L TAT
Sbjct: 87  AARKRGVDVRVLMDVGQLDKNSNDRLKQLRGAGIPVWLETDYRNAHNKVIIIDAPLATAT 146

Query: 144 VITGSYNFTWSAQHKNAENVLILGKNPPLAARYASNWQRHRQDAEAAP 191
           VITGSYNFTWSAQHKNAEN+L+LGKNP LAARYA NWQRHRQDAEAAP
Sbjct: 147 VITGSYNFTWSAQHKNAENILVLGKNPALAARYAENWQRHRQDAEAAP 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,029
Number of extensions: 20850
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)