BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0978.p (203 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy... 359 e-101 gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl... 100 1e-22 >gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formyltransferase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 359 bits (922), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/200 (89%), Positives = 187/200 (93%) Query: 1 MRSIVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGIATAVIANR 60 MRSIVILISGRGSNMEAIVRAAQAE+WPA+IAAVISNRADASGL FAA GI TAVI +R Sbjct: 1 MRSIVILISGRGSNMEAIVRAAQAEQWPAKIAAVISNRADASGLAFAAQRGIPTAVIPSR 60 Query: 61 DYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSFPGLA 120 DY TR+QFD+ALR +IDTFAPDLVVLAGFMRILTAPFV HYQGRMLNIHPSLLPSFPGLA Sbjct: 61 DYSTREQFDSALRDKIDTFAPDLVVLAGFMRILTAPFVEHYQGRMLNIHPSLLPSFPGLA 120 Query: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHVIYPR 180 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPV E+DSEE LAERVLEQEHVIYPR Sbjct: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVQEEDSEEALAERVLEQEHVIYPR 180 Query: 181 AVRWFVQGRLALDGARVRLA 200 AVRWF+ GRL LDG RVRLA Sbjct: 181 AVRWFIDGRLRLDGHRVRLA 200 >gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase [Herbaspirillum seropedicae SmR1] Length = 289 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 5/196 (2%) Query: 4 IVILISGRGSNMEAIVRAAQAERWPARIAAVISNRADASGLEFAASHGIA---TAVIANR 60 +++++S G + ++ ++ P I A++SN D + AAS+ I + Sbjct: 91 VMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDF--YQLAASYNIPFHHLPLATGA 148 Query: 61 DYPTRDQFDAALRAQIDTFAPDLVVLAGFMRILTAPFVNHYQGRMLNIHPSLLPSFPGLA 120 + + + ++ DLVVLA +M+IL+ +GR +NIH S LPSF G Sbjct: 149 PMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKGAK 208 Query: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVLEDDSEETLAERVLEQEHVIYPR 180 + QA GVKL GAT HFVT DLD GPI+ Q V +TL + E V+ R Sbjct: 209 PYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVLAR 268 Query: 181 AVRWFVQGRLALDGAR 196 AV+WF + R+ L+G + Sbjct: 269 AVKWFTEHRILLNGHK 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 663,458 Number of extensions: 28319 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 3 Length of query: 203 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 122 Effective length of database: 1,236,335 Effective search space: 150832870 Effective search space used: 150832870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)