BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0967.p
         (450 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large ...   790   0.0  

>gi|300310499|ref|YP_003774591.1| exodeoxyribonuclease VII large
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/438 (89%), Positives = 410/438 (93%)

Query: 13  MLTVSALNQAVARMLERNFPLIWVKGEISNFTRAASGHWYFNLKDDGAQVRAVMFKGRAQ 72
           MLTVSALNQAV RMLERNFPL+WVKGE+SNFTRAASGHWYFNLKD+GAQVRAVMFKGRAQ
Sbjct: 1   MLTVSALNQAVGRMLERNFPLLWVKGEVSNFTRAASGHWYFNLKDEGAQVRAVMFKGRAQ 60

Query: 73  YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFVQLKERLEREGLFD 132
           YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAF+QLKERLEREGLF 
Sbjct: 61  YAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRSGVGDLYAAFLQLKERLEREGLFA 120

Query: 133 RERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPVQGEGAAQRIATA 192
           RERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPVQGEGA QRIA A
Sbjct: 121 RERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAPHVEVVLYPTPVQGEGAGQRIAAA 180

Query: 193 IQTASARAECDVLLVCRGGGSIEDLWSFNEEVVARAIVAAAMPVISGVGHETDFTIADFA 252
           I  AS RAECDVLLVCRGGGSIEDLWSFNEEVVARAIVAA MPVISGVGHETDFTIADFA
Sbjct: 181 IGRASERAECDVLLVCRGGGSIEDLWSFNEEVVARAIVAATMPVISGVGHETDFTIADFA 240

Query: 253 ADLRAPTPTAAAELAATAREDWLAELRSHALDLTRALRRSLTDKAQSVDWLARRLVNPGA 312
           ADLRAPTPTAAAELAA++R+DWLAELR HA DLTRALRR+L DKAQSVDWL+RRLV+P A
Sbjct: 241 ADLRAPTPTAAAELAASSRQDWLAELRGHAADLTRALRRTLADKAQSVDWLSRRLVSPSA 300

Query: 313 YIQHERVKLAALQTRLSHATRVPLTRMRHRLQQLSTHLAHQIPDTAHARRDLHDLARRLQ 372
           YIQHERVKL ALQ RLSHA ++PLTRMRH LQQL++ LAHQ+PDT HARRDL +LARRLQ
Sbjct: 301 YIQHERVKLLALQNRLSHANQIPLTRMRHGLQQLASRLAHQLPDTRHARRDLAELARRLQ 360

Query: 373 GAQAAQQLRQRQVLAGWHTQLELLNPQRTLERGYAIVSDRQGRVLHAPAELAARSEVTIR 432
            AQ AQQ  QRQ L   H+QLELLNPQRTLERGYAIVSD QGRVLH+PAELAARSE+TIR
Sbjct: 361 RAQGAQQSAQRQTLTTLHSQLELLNPQRTLERGYAIVSDHQGRVLHSPAELAARSEITIR 420

Query: 433 LAQGSAEVGIASVQPRLD 450
           LAQGSAEVGIASVQPRLD
Sbjct: 421 LAQGSAEVGIASVQPRLD 438


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,218,981
Number of extensions: 44788
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 362
Effective length of database: 1,203,190
Effective search space: 435554780
Effective search space used: 435554780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)