BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0960.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310489|ref|YP_003774581.1| glucarate dehydratase [Herbaspi...   828   0.0  
gi|300310475|ref|YP_003774567.1| mandelate racemase/muconate lac...   243   2e-65

>gi|300310489|ref|YP_003774581.1| glucarate dehydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/453 (92%), Positives = 440/453 (97%), Gaps = 1/453 (0%)

Query: 7   AAAVPDSSAALHKGAPRVTEMRVIPVAGHDSMLLNLSGAHGPYFTRNIVILTDSAGHTGV 66
           +AA+P +   + +GAPRVTEMRVIPVAGHDSMLLNLSGAHGPYFTRN+VILTDSAG+TGV
Sbjct: 4   SAAIPHTVQPV-QGAPRVTEMRVIPVAGHDSMLLNLSGAHGPYFTRNLVILTDSAGNTGV 62

Query: 67  GEVPGGEGIRQTLEDARALVVGQSIGNVQGILNRARSAFADRDAGGRGLQTFDLRIAIHA 126
           GEVPGGEGIRQTLEDAR LVVGQSIGNVQGILNRAR+AFADRD GGRGLQTFDLRIAIHA
Sbjct: 63  GEVPGGEGIRQTLEDARTLVVGQSIGNVQGILNRARTAFADRDTGGRGLQTFDLRIAIHA 122

Query: 127 VTALEAALLDLLGQFLEVPVAALLGEGQQRSEVEMLGYLFYVGDRNKTDLPYLSAPDAAD 186
           VTALEAALLDLLG+FL+VPVAALLGEGQQR EVEMLGYLFYV DRNKTDLPYL+APDA D
Sbjct: 123 VTALEAALLDLLGKFLDVPVAALLGEGQQRDEVEMLGYLFYVADRNKTDLPYLAAPDAQD 182

Query: 187 DWLRLRHEAAMTPEAVVRLAEAAYARYGFNDFKLKGGVMRGEEEIVAVTALAERFPKARI 246
           DW RLRHEAA+TPEAVVRLAEAAYARYGFNDFKLKGGVMRGEEEI AVTALAERFPKARI
Sbjct: 183 DWTRLRHEAALTPEAVVRLAEAAYARYGFNDFKLKGGVMRGEEEIAAVTALAERFPKARI 242

Query: 247 TLDPNGGWLLKDAIRLCRDQHDVLAYAEDPCGAEEGYSGREVMAEFRRATGLQTATNMVA 306
           TLDPNGGWLLKDAIRLCRDQHDVLAYAEDPCGAE+GYSGREVMAEFRRATGLQTATNMVA
Sbjct: 243 TLDPNGGWLLKDAIRLCRDQHDVLAYAEDPCGAEDGYSGREVMAEFRRATGLQTATNMVA 302

Query: 307 TDWRQMGHAISLQSVDIPLADPHFWTMQGSVRVAQMCNEWGLTWGSHSNNHFDISLAMFT 366
           TDWRQMGHAISLQSVDIPLADPHFWTMQGSVRVAQMC+EWGLTWGSHSNNHFD+SLAMFT
Sbjct: 303 TDWRQMGHAISLQSVDIPLADPHFWTMQGSVRVAQMCHEWGLTWGSHSNNHFDVSLAMFT 362

Query: 367 HVAAAAPGKITAIDTHWIWQEGQRLTREPLQIVGGKVQVPSKPGLGVEVDMAQIEAAHQT 426
           HVAAAAPGKITAIDTHWIWQ+GQRLTREPLQIVGGKVQVP+KPGLGVE+DMAQ+EAAHQT
Sbjct: 363 HVAAAAPGKITAIDTHWIWQDGQRLTREPLQIVGGKVQVPTKPGLGVELDMAQVEAAHQT 422

Query: 427 YRNMGLGARDDAVAMQYLIPGWKFDHKKPCLVR 459
           YRNMGLGARDDAVAMQYLIPGWKFD KKPCLVR
Sbjct: 423 YRNMGLGARDDAVAMQYLIPGWKFDPKKPCLVR 455


>gi|300310475|ref|YP_003774567.1| mandelate racemase/muconate
           lactonizing [Herbaspirillum seropedicae SmR1]
          Length = 424

 Score =  243 bits (620), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/435 (37%), Positives = 223/435 (51%), Gaps = 26/435 (5%)

Query: 23  RVTEMRVIPVAGHDSMLLNLSGAHGPYFTRNIVILTDSAGHTGVGEVPGGEGIRQTLEDA 82
           ++T + V P+A  D  LLN SG H PY  R+I+ +    G+ G+GE  G     + L+  
Sbjct: 2   KITRVTVTPIAFKDGPLLNASGIHEPYALRSIIEIETDNGYIGLGESYGDAPALKILDLV 61

Query: 83  RALVVGQSIGNVQGILNRAR---SAFADRDAGGRGLQ--TFDLRIAIHAVTALEAALLDL 137
           +  +VG    N+ G+    R   +A A     G  L   +   +   +A +A E A LD 
Sbjct: 62  KERLVGLDPFNLNGLRAIVRGVVAAMAPASNAGAELAPGSHASKAVSNAYSAFEVACLDA 121

Query: 138 LGQFLEVPVAALLGEGQQRSEVEMLGYLFYVGDRNKTDLPYLSAPDAADDWLRLRHEAAM 197
             ++L VP+  LLG G  R E+    YLF+   ++  D PY  APDA   W       A+
Sbjct: 122 QARYLNVPLVDLLG-GAVRKEIPFSAYLFFKYAQH-IDSPY--APDA---W-----GEAL 169

Query: 198 TPEAVVRLAEAAYARYGFNDFKLKGGVMRGEEEIVAVTALAERFPKARITLDPNGGWLLK 257
           + E +V  A       GF   KLK G +  E E+  + AL + FP A + +DPNG W L+
Sbjct: 170 SEEQIVAQARKMIEENGFQSIKLKAGALAPEHEVACIKALRKAFPDAPLRIDPNGNWSLQ 229

Query: 258 DAIRLCRDQHDVLAYAEDPCGAEEGYSGREVMAEFRRATGLQTATNMVATDWRQMGHAIS 317
            AIR+     D L Y EDP    EG      MAE  R TGL  ATNMV TD+ ++  +++
Sbjct: 230 TAIRMAELLGDDLQYYEDPTPGLEG------MAELHRRTGLPLATNMVVTDFDELRRSVA 283

Query: 318 LQSVDIPLADPHFW-TMQGSVRVAQMCNEWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI 376
           L SV I LAD H+W  ++ + ++A+MC+ +GL    HSN+H  ISL   +HVAAA     
Sbjct: 284 LDSVQIVLADHHYWGGLRDTQQLAKMCDVFGLGVSMHSNSHLGISLMAMSHVAAAVENLS 343

Query: 377 TAIDTHWIWQEGQRLTRE--PLQIVGGKVQVPSKPGLGVEVDMAQIEAAHQTYRNMGLGA 434
            A DTH+ WQE      +   L I  G VQ+   PGLGVEVD  Q+   HQ Y   G+  
Sbjct: 344 YACDTHYPWQEPDEEVIQGGKLPIRNGCVQITDAPGLGVEVDQDQLRKLHQLYLECGIRQ 403

Query: 435 RDDAVAMQYLIPGWK 449
           RDD   M+   P WK
Sbjct: 404 RDDVGQMRKYQPDWK 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,517,376
Number of extensions: 67192
Number of successful extensions: 203
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 2
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)