BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0958.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309642|ref|YP_003773734.1| aldo/keto reductase [Herbaspiri...    99   3e-22
gi|300312028|ref|YP_003776120.1| oxidoreductase protein [Herbasp...    62   4e-11

>gi|300309642|ref|YP_003773734.1| aldo/keto reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score = 99.0 bits (245), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 133/258 (51%), Gaps = 23/258 (8%)

Query: 5   SLPPLGLGTFRL-----KGQQVIDSVRTGLELGYRHIDTAQIY---GNEAEVGQAIADSG 56
           S+P LG GT+ +     +    + +++ GL+LG   IDTA++Y   G E  V +AIA   
Sbjct: 14  SVPILGQGTWNMGESPAQANAEVRALQAGLDLGMSLIDTAEMYAEGGAERIVAKAIAGR- 72

Query: 57  VARDALFVTTKIWTENLAGDKLIPSLKDSLYKLRLGQVDLTLIHWPAAHDALPVADYLHT 116
             RD +++ +K+   N +    I + + SL +L   ++DL L+HW  AH   P+A  +  
Sbjct: 73  --RDQVYLVSKVLPHNASKRGTIAACEASLKRLGTDRIDLYLLHWRGAH---PLAATIEG 127

Query: 117 LAQAKAEGLTRQIGISNFTIAHMEQAIAAIGTEQIATNQVEIHPFLQNRKLVEF-----A 171
           +    ++G     G+SNF    ++  +     E    NQV    +  +R+ +E+     A
Sbjct: 128 METLVSQGKIGGWGVSNFDTDDIDDLLEEPHGEHYLCNQVL---YNLSRRGIEYDLLPQA 184

Query: 172 RAKGIHLTAYMPLAYGKVMQDATLLEIAARHGVSAAQVALAWSLQQ-GFAVIPSSTRREN 230
           +   I + AY P+  G++++   L  +A  H V+ AQ+ALAW L+Q G   IP +    +
Sbjct: 185 QQAHIAVMAYSPIEQGRILKHPALTALAQAHRVTPAQIALAWVLRQPGVVAIPKAADVAH 244

Query: 231 LAANLAAQTLRLSPAEMQ 248
           + AN A+  + LS A+++
Sbjct: 245 VQANRASLDISLSAADLK 262


>gi|300312028|ref|YP_003776120.1| oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 126/314 (40%), Gaps = 86/314 (27%)

Query: 29  LELGYRHIDTAQIYG----------NEAEVGQAIADSGVARDALFVTTKI---------- 68
           +E G   ID A++Y            E  +G  +  SG  RD L + TK           
Sbjct: 40  VERGINLIDVAEMYPVPPKAETQGLTERYLGTWLKKSG-KRDQLLIATKCTGPARKPHNP 98

Query: 69  -----WTENLAGDKLIPSLKDSLYKLRLGQVDLTLIHWP---------------AAHDAL 108
                   NL    L  +L  SL +L+L  VDL  +HWP                    +
Sbjct: 99  RHVRGGINNLDRKGLTEALHGSLERLQLDHVDLYQLHWPDRSVNSFGQLGYQHVEDESTV 158

Query: 109 PVADYLHTLAQAKAEGLTRQIGISNFT---IAHMEQAIAAIGTEQIATNQVEIHPF-LQN 164
           P+ + L  L++    G  R IG+SN T   +A   +A    G E+I T Q   +P+ L N
Sbjct: 159 PIEETLTVLSEFVKAGKIRTIGLSNETAWGVAQFLRAAEQHGLERIVTIQ---NPYNLLN 215

Query: 165 R----KLVEFARAKGIHLTAYMPLAY----GKVMQDA-------TLLE------------ 197
           R     L EFA  + + L AY PLA+    GK +  A       TL E            
Sbjct: 216 RSFEINLAEFAHREQVGLLAYSPLAFGMLSGKYLDGARPAGGRLTLFERFSRYTNAQAER 275

Query: 198 -------IAARHGVSAAQVALAWSLQQGF--AVIPSSTRRENLAANLAAQTLRLSPAEMQ 248
                  +A +HG+  AQ+ALA+   + F  + I  +T    L +N+ +  L+L    + 
Sbjct: 276 ATAEYVALARQHGLDPAQMALAYVNSRPFLTSNIIGATTLAQLRSNIDSAELQLGEDVLA 335

Query: 249 AIAGLDRGERLANP 262
           AI  + R  R  NP
Sbjct: 336 AIEAIHR--RQPNP 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 855,868
Number of extensions: 35428
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)