BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0957.p (441 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310487|ref|YP_003774579.1| serine proteinase [Herbaspirill... 551 e-158 gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine... 102 5e-23 gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine... 99 8e-22 gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine... 84 2e-17 >gi|300310487|ref|YP_003774579.1| serine proteinase [Herbaspirillum seropedicae SmR1] Length = 438 Score = 551 bits (1419), Expect = e-158, Method: Compositional matrix adjust. Identities = 289/441 (65%), Positives = 339/441 (76%), Gaps = 20/441 (4%) Query: 1 MPAVEAKIPLQLSADATARPAYLARSQRRFDATSPIIGELQGGLFCSRKNDIVWNQKSSE 60 MP VE + PL + A A ARP+YLAR QRR++ + IGELQ GLFCSRK+DI W K SE Sbjct: 1 MPPVEIRQPLVMPATAAARPSYLARIQRRYEQGNQPIGELQNGLFCSRKSDIYWTAKGSE 60 Query: 61 LLLPTNAMFARFRRELQQYGYPVPMPVAQPLFQEKTDANAPGTGDKPRPQDFNLQVGVIV 120 LLPT M ARFR ELQ++GYP+P P PLFQEK D P ++ +LQVGVIV Sbjct: 61 ALLPTGVMLARFRSELQKHGYPLPGPKEAPLFQEKPDDATPSQAEQ------SLQVGVIV 114 Query: 121 SQVQTNLCLKGTNTWTGEAYVRLEWQVFAPEQRKVIYRTTTEGVYRARDKNFEGAVPPMP 180 +QV TNLCLKG +WTGEAY+RLEWQVFAP+QRKVI++T +EGV+++R + EGA PP+ Sbjct: 115 AQVLTNLCLKGNASWTGEAYLRLEWQVFAPDQRKVIFKTVSEGVFQSRQASLEGAAPPIV 174 Query: 181 VEAFAVAVHNLLADPQFALAVQAPYDSVAAAANANLPQGS-------------TDPVAPG 227 EAF+V V NLLADP FALA+Q PYD AAAANA++ S PV PG Sbjct: 175 AEAFSVGVRNLLADPAFALALQTPYDRAAAAANASILPPSQPAAPGAGAGGAVNKPV-PG 233 Query: 228 SPVLIDNQPAEHPGSDIAKVMPELRSAVVTVLTERGSGTGFYIGSSGWLLTNYHVIGGAQ 287 V IDN PA PG +++KV+ +LR VVTVLTE SGTGFYIG SGWLL+N HV+G A+ Sbjct: 234 LAVSIDNLPAAQPGGEMSKVIGQLRQGVVTVLTEGRSGTGFYIGQSGWLLSNQHVVGTAR 293 Query: 288 SVRVRLPTGRELVAQVARADAARDIALLKTETPGVRPMPLRNGEPGVGEDVYALGSPLGD 347 SVRVRLP GREL A+V R DAARD+ALLKTE PGVRP+PLR EPG+GEDVYALGSPLGD Sbjct: 294 SVRVRLPGGRELPAEVLRVDAARDVALLKTEPPGVRPLPLRLDEPGLGEDVYALGSPLGD 353 Query: 348 AFNTTLTRGILSGVRMVRDLEFLQSDVAILPGSSGGPLLDKSGQVVGITVAGLGAKGLAG 407 FNTTLTRGILSGVR++ EFLQSDVAILPGSSGGPLLD+SGQVVGITVAGLGA+G+AG Sbjct: 354 TFNTTLTRGILSGVRLLNGQEFLQSDVAILPGSSGGPLLDRSGQVVGITVAGLGARGMAG 413 Query: 408 MNFFIPVGSAIERLHLQLQNQ 428 MNFFIP+ SA+ERL+LQLQ + Sbjct: 414 MNFFIPLASAVERLNLQLQQR 434 >gi|300313678|ref|YP_003777770.1| periplasmic trypsin-like serine endoprotease [Herbaspirillum seropedicae SmR1] Length = 494 Score = 102 bits (255), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 26/201 (12%) Query: 262 RGSGTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPG 321 G G+GF I G +LTN HV+ GAQ V V+L RE A+V D DIA+++ + Sbjct: 123 HGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAKN 182 Query: 322 VRPMPLRNGEPG---VGEDVYALGSPLGDAFNTTLTRGILSG-VRMVRD---LEFLQSDV 374 + + + G+P VG+ V A+GSP G F+ T T GI+S R + D + F+Q+DV Sbjct: 183 LPTVQI--GDPSRVKVGQPVLAIGSPYG--FDNTATAGIISAKSRSLPDDNYVPFIQTDV 238 Query: 375 AILPGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIE-------------- 419 A+ PG+SGGPL D +GQV+GI G G++F IP+ A++ Sbjct: 239 AVNPGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRG 298 Query: 420 RLHLQLQNQNQGQTQSQVSKK 440 RL + +Q+ NQ + S KK Sbjct: 299 RLGVSVQDLNQALSDSFGLKK 319 >gi|300311256|ref|YP_003775348.1| periplasmic trypsin-like serine protease [Herbaspirillum seropedicae SmR1] Length = 492 Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 11/171 (6%) Query: 262 RGSGTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPG 321 RG G+GF I + G+++TN HV+ GA V V L RE A++ +D D+A+LK + Sbjct: 114 RGVGSGFIISADGFIMTNAHVVEGASEVYVTLTDKREFKAKIVGSDTRTDVAVLKIDGSN 173 Query: 322 VRPMPLRNGEP-GVGEDVYALGSPLGDAFNTTLTRGILSGVRMVRD----LEFLQSDVAI 376 + + + + + VGE V A+GSP G T+T GI+S RD L +Q+DVA+ Sbjct: 174 LPRLNMGDSDKIRVGEWVLAIGSPFG--LENTVTAGIVSA--KARDTGDYLPLIQTDVAV 229 Query: 377 LPGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSAIERLHLQLQ 426 PG+SGGPL++ G+V+GI + G G++F +P+ A+ R+ QL+ Sbjct: 230 NPGNSGGPLINLKGEVIGINSQIYSRSGGFMGISFAVPIDEAL-RVADQLK 279 >gi|300313338|ref|YP_003777430.1| periplasmic trypsin-like serine protease [Herbaspirillum seropedicae SmR1] Length = 393 Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 13/162 (8%) Query: 265 GTGFYIGSSGWLLTNYHVIGGAQSVRVRLPTGRELVAQVARADAARDIALLKTETPGVRP 324 G+G + G++LTN HV+ A + V L GR+ A+V D D+A++K + P + Sbjct: 114 GSGVIVSPQGYILTNNHVVEAADKIEVALADGRKASAKVVGIDPETDLAVIKIDLPNLPA 173 Query: 325 MPLRNGE-PGVGEDVYALGSPLGDAFNTTLTRGILS-------GVRMVRDLEFLQSDVAI 376 + L + E VG+ V A+G+P G T+T GI+S G+ + F+Q+D AI Sbjct: 174 ITLGHPENSSVGDVVLAIGNPFG--VGQTVTMGIVSALGRNHLGINTFEN--FIQTDAAI 229 Query: 377 LPGSSGGPLLDKSGQVVGITVAGLG-AKGLAGMNFFIPVGSA 417 PG+SGG L+D +G ++GI A G G+ F IP+ +A Sbjct: 230 NPGNSGGALVDTNGNLLGINTAIYSRTGGNLGIGFAIPMSTA 271 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,463,945 Number of extensions: 66998 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 4 Length of query: 441 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 353 Effective length of database: 1,203,190 Effective search space: 424726070 Effective search space used: 424726070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)