BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0956.p
         (432 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...   776   0.0  
gi|300310608|ref|YP_003774700.1| major facilitator superfamily p...    89   6e-19

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/420 (95%), Positives = 409/420 (97%), Gaps = 2/420 (0%)

Query: 1   MNKLTQSLANAVTPRFHYAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISV 60
           M K TQSLANAVTPRFHYAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISV
Sbjct: 1   MTKFTQSLANAVTPRFHYAWVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISV 60

Query: 61  VISVNIALYGLIGPFSAAAMQRFGIRRVVLGALVLLASGTALSTLMHMPWHMLLSWGLLV 120
           VISVNIALYGLIGPFSAAAMQRFGIRRVVL ALVLLASGTALSTLMHMPWHMLLSWGLLV
Sbjct: 61  VISVNIALYGLIGPFSAAAMQRFGIRRVVLAALVLLASGTALSTLMHMPWHMLLSWGLLV 120

Query: 121 GAGTGVAANTLGATIVSRWFETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVAL 180
           GAGTGVAANTLGATIVSRWFETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVA 
Sbjct: 121 GAGTGVAANTLGATIVSRWFETRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVAF 180

Query: 181 LVSLVAVLAIPLVWLLLPESPAAIGQKMVGQTSDIKDEGPDQSRRNPLSIALGALRTSVR 240
           LVS VA+LAIPLVWLLLPESPAAIGQKM+GQTS+IKDEG   SRRNPL IAL ALRTSVR
Sbjct: 181 LVSAVALLAIPLVWLLLPESPAAIGQKMLGQTSEIKDEG--LSRRNPLFIALDALRTSVR 238

Query: 241 MPDFWLLFMSFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASILAAMGMLDLVGTTLSGW 300
           MPDFWLLF SFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASILAAMGMLDLVGTTLSGW
Sbjct: 239 MPDFWLLFASFFVCGLSTNGYIGTQFIAMCNDYGINEVSSASILAAMGMLDLVGTTLSGW 298

Query: 301 LSDRYNPRVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLAND 360
           LSDRYNPRVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLAND
Sbjct: 299 LSDRYNPRVLLFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLAND 358

Query: 361 VFGRLAAPIVFGWIVAGHQLGAATATTVAGYLRASLGNYTLSSIMMGVACLIGAVLVLRI 420
           VFGRLAAPIVFGWIVAGHQLGAATATT+AGYLRASLGNYTLSSI+MGVACL+GAVLVLRI
Sbjct: 359 VFGRLAAPIVFGWIVAGHQLGAATATTLAGYLRASLGNYTLSSILMGVACLVGAVLVLRI 418


>gi|300310608|ref|YP_003774700.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 407

 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 116/411 (28%), Positives = 194/411 (47%), Gaps = 37/411 (9%)

Query: 20  WVVVGVIFLVLLCSAGIRATPSVMILPLEQEFGWNRSTISVVISVNIALYGLIGPFSAAA 79
           W+VV     ++  + G R T  + I PL  + G   + ++  I+++  ++G+    + A 
Sbjct: 11  WLVVLAGAAIMSMALGSRQTFGLFISPLSYDHGLPVTLVAFAIALHNLVWGVAQSLAGAL 70

Query: 80  MQRFGIRRVVLGALVLLASGTALSTLMHMPWHMLLSWGLLVGAGTGVAANTLGATI--VS 137
             R G   VV    V  A G AL+ L   P   +L  G+ V  G G++  + G  +  V 
Sbjct: 71  TDRHGPAPVVAFGAVCYAIGLALTALA--PNGAVLVLGMGVFIGVGISCTSFGVVLPAVG 128

Query: 138 RWFE-TRRGLAMGLLTASAATGQMVFLPLMAAMVGSYGWRSVALLVSLVAVLAIPLVWLL 196
           R     RR  AMGL++A  + GQ++ LPL+  +  + G  S+AL+V  + VLA+  + L 
Sbjct: 129 RSVPAERRSSAMGLVSAGGSLGQVLMLPLVQGLRATSG-MSLALMVLALLVLAVAPLGLA 187

Query: 197 LPESPAAIGQKMVGQTSDIKDEGP--DQSRRNPLSIALGALRTSVRMPDFWLLFMSFFVC 254
           L             +T  +  + P  D S R  ++ A     T+ R   + LL + FF C
Sbjct: 188 L------------ARTGPVAADAPRLDYSVREVIAQA-----TAHR--GYQLLTLGFFAC 228

Query: 255 GLSTNGYIGTQ---FIAMCN-DYGINEVSSASILAAMGMLDLVGTTLSGWLSDRYNPRVL 310
           G     +I T    ++ +C+   G+    +A+ LA +G+ ++ G+   GWL  RY P+ +
Sbjct: 229 GFQL-AFIATHLPGYLELCHMPMGL----AATALALIGLFNMAGSWACGWLGGRYRPQRV 283

Query: 311 LFWYYGLRGLALIFLPYAFGLQYYGLTIFAIFYGLDWIATVPPTVRLANDVFGRLAAPIV 370
           L W Y +R  A I L +        +T+FA   GL W+ TVP T  L   +FG      +
Sbjct: 284 LGWLYLVRSTA-IGLFFIAPKSSQSVTLFAAVMGLTWLGTVPLTTGLVARLFGTAHMGTL 342

Query: 371 FGWIVAGHQLGAATATTVAGYLRASLGNYTLSSIMMGVACLIGAVLVLRIK 421
           FG     HQ+G+     + G++    G+Y+L  +   V  ++ A+L   I+
Sbjct: 343 FGVCFLSHQVGSFLGAWLGGWMLEVTGSYSLLWMATFVVGIVAALLHFPIE 393


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,139
Number of extensions: 48267
Number of successful extensions: 336
Number of sequences better than 1.0e-08: 11
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 11
Length of query: 432
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,203,190
Effective search space: 413897360
Effective search space used: 413897360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)