BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0953.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146...   234   5e-63

>gi|300310479|ref|YP_003774571.1| hypothetical protein Hsero_1146
           [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  234 bits (597), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 182/254 (71%), Positives = 199/254 (78%), Gaps = 11/254 (4%)

Query: 1   MSPQETQALQDFLNQLTQVRGIAKDAQAEAMIAAAVAQQPDAAYLLVQRALLMEQALKTS 60
           MSPQETQALQDFL QLT+VRGI+KD QA+AMIAAAVA+QPDAAYLLVQRALL+EQAL  +
Sbjct: 1   MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60

Query: 61  QAQVAQLQSQVQSLQAGAGRSSGFLDGNVWGNAPAAAARPTVAPAAAAPAYNPAYNPAYA 120
           +AQVA LQSQVQ+LQAG  R  GFLDGN WG A  A+       AA A    PAY    A
Sbjct: 61  KAQVAALQSQVQALQAGGAREPGFLDGNAWGRAATASRPQAYGSAAPATPAAPAYAAPAA 120

Query: 121 PAAPVAAAPAPAPSSGFFGGGMGSVLGSVAATAAGVAGGAFLFQGIEHLFNGGSGSGLGH 180
           PA   A APAPAPSSGFFGGGMGS+LG+VAATAAGVAGGAFL+QGIEHLFNG  GSG  H
Sbjct: 121 PAYQAAPAPAPAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNGGSGFAH 180

Query: 181 QNGLSAPVENIENTTVNNYYGSDGDNKSNLAGNDRFSDNSNTYDNGDNFGSSSDLADLSN 240
           QNGLSAPVENIENTTVNNYYGSD D  S+ A +D           G++FGSS+DLADL N
Sbjct: 181 QNGLSAPVENIENTTVNNYYGSDADRSSDQASSD-----------GNDFGSSNDLADLGN 229

Query: 241 FDLDDSGGYDDSLV 254
            DLDDSGGYDDSLV
Sbjct: 230 VDLDDSGGYDDSLV 243


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.127    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 285,144
Number of extensions: 6362
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)