BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0948.p
         (727 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitr...    57   6e-09

>gi|300310609|ref|YP_003774701.1| outer membrane Iron(III) dicitrate
           transport protein [Herbaspirillum seropedicae SmR1]
          Length = 703

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 132/597 (22%), Positives = 222/597 (37%), Gaps = 86/597 (14%)

Query: 130 TMTFDGIPFSDTNSSSHHSWAFFPSQFLGGTVVDRSPGSAAT-VGQANFGGSVNLLSRVM 188
           T+  DGIP +          +F P        +D   G  A   G  N GG +N  +R +
Sbjct: 129 TILLDGIPMA-VAPYGQPQLSFAPLSLNNIESIDVVRGGGAVRFGPQNVGGIINFKTRSI 187

Query: 189 QPEQRSS-----VFGSYGSFNTRIYGAEFETGQFGIDGAHNLLINAHEMKSDGYQSYNKQ 243
                 S      + SYG          F  GQ         L +  E    G++  + +
Sbjct: 188 PTTPGISGDAAVRYNSYGQGGGNTQYTAFAGGQAENGFGMAFLYSGQE--GSGWRDKSDE 245

Query: 244 ARDAISLKYQFAISDNTALTLFASYIDLKTNTPNTKGATRAQIAQFGDDYLLSGNPKDPN 303
             +  +LK ++ IS  + L    +Y D+ + TP         +AQ+  D   S   +D  
Sbjct: 246 HLNDFALKMRYEISPTSELYAKINYYDVLSRTPGG-----LSVAQYAADPFQSTRQRD-- 298

Query: 304 YFGYNFYHVTSDFD--YLGLSSNLGGGWKLDDKVYTYAYHNQQNYNGSTISATSATDKLN 361
               N+      FD  YL   S+     + + ++ TY     +       + T  + +  
Sbjct: 299 ----NWGGTRKGFDVGYLNTISD-----RQEFEIRTYFSQATRQSTLINPAGTRLSHQPR 349

Query: 362 AYRAYGNLLRLNHESSLG----TLRSGLWLEVSNSDRHQYPSSPLTWIDTALPNFRESYT 417
            Y   G   R     + G     +  G        D + Y  + LT + +    F+ S  
Sbjct: 350 NYETLGIEPRYTQRFAWGGTTHDVTVGYRYVRERGDDNVYSEAVLTGVLSGFTQFQNS-- 407

Query: 418 STILQPFVEYEFKVTPELKVTPGIKYSSYRQDLTQFADNGK-TVGNLGGRPFVKNAATYN 476
           +     +++ +     + ++TPG+++   +      A+N    V N             N
Sbjct: 408 TDAHAGYIDDKIAFG-KWRITPGLRFEHVQSTRYDVANNASYQVSN-------------N 453

Query: 477 TYLPSLDAHYMLRPNWSVYAQFAAGDEIPPTSVFDTKNASVSALPASIK-SKTWQTGSVW 535
             LPS++  Y+L    ++++ +     +   S  +T +   SA P S + +KT + G  W
Sbjct: 454 KPLPSINVAYLLTEQLTLFSNYNTSFGVVQNSQLNTMS---SANPLSPELAKTIEGGVRW 510

Query: 536 KDEHLTVDVDAYRIKFDNAYSSFTDNNGFTSYFAN-GSSTTQGIEA-------ESTLLLG 587
           K    + +   + I FDN   S    N   S F N G +   GIE        + ++L  
Sbjct: 511 KSARASAEATVFHIDFDNQIVSVQGTN--PSVFRNIGKTQHDGIELAMDYAFDQQSVL-- 566

Query: 588 SGFSLYLNATYGSAKYQSGKWVAGAPGD--------TEAVGLNYGQGPWGISWLNKRVGS 639
            G+S+Y N TY  A  +SG      PG         T+ VG  +  GPWG +      G 
Sbjct: 567 KGWSVYANYTYTRALQKSG----ANPGKDLPFYARTTDTVGTRFKSGPWGFNLSTTHQGR 622

Query: 640 TYGDNGN-VHEAV-----RISPFMLSNLFANYTIKNPGAMIKQAKLQFGVNNLFDKH 690
            + D  N + E+       I  F L N   ++ +  PG   K   +  G+NNL D+ 
Sbjct: 623 QFSDEANTIAESADGSIGEIPGFRLWNAQVDWKV--PGT--KGFDVFAGINNLTDRR 675


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,326,962
Number of extensions: 100475
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 3
Length of query: 727
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 635
Effective length of database: 1,184,250
Effective search space: 751998750
Effective search space used: 751998750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 134 (56.2 bits)