BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0947.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313680|ref|YP_003777772.1| two component response regulato... 241 4e-65 gi|300311750|ref|YP_003775842.1| transcription response regulato... 179 2e-46 gi|300309981|ref|YP_003774073.1| two component response regulato... 179 2e-46 gi|300313818|ref|YP_003777910.1| two component transcription reg... 154 8e-39 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 153 1e-38 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 241 bits (614), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 119/214 (55%), Positives = 159/214 (74%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LLVEDD M+G++VRKG GF +DW++DG SA AL E YA ++LDLGLP ++GL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL+ LR+ + PV+I +A DAV R+AGL+AGADDY+ KPFDLEEL+AR+RAL RR Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 GR S + EV +PAT V G+ V LSARE +L A +++P VLSRAQL E++YG Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVRNIRGLGY 214 W++ ++SN +EVHIHALRKK+ D ++N+RG+GY Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGY 214 >gi|300311750|ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/215 (48%), Positives = 148/215 (68%), Gaps = 2/215 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LLVEDD M+G+ VR G+ DW+R G +A AL + Y A++LDLGLPG +GL Sbjct: 1 MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 VL++LR PV++ +A D +Q RI GL+AGADDY+ KPF + EL AR+RA+LRR Sbjct: 61 AVLRQLRT-HSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRS 119 Query: 121 GRQSSTMVHGEVEFDPATQVVRHR-GRRVALSAREMLVLSALIEKPEAVLSRAQLVERIY 179 G S + +G++ D A + R G V LSARE +L AL+ +P A+LSRA+L E++Y Sbjct: 120 GAASDQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLY 179 Query: 180 GWNEEVDSNTIEVHIHALRKKIAPDVVRNIRGLGY 214 GW EEV+SN +E IH+LR+K+ + ++N+RG+G+ Sbjct: 180 GWGEEVESNAVEFLIHSLRRKLDKEAIKNVRGMGW 214 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 179 bits (453), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LL EDD +L D + + G+ D +++G+ A +AL + + ++LDLGLP +GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 EVL++LR PV+I +A D+V+QR+ GL+ GADDY+ KPF L EL AR+RAL RR Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 G + + HG + +D ++ + + LSARE+ +L L+++ ++S+ QLV+ + Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPDVVR--NIRGLGYTM 216 W EEV +N IEV++H LRKKI VR +RGLGY + Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 154 bits (388), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 5/221 (2%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 MR+LLVED L + K V+ +G A + L + YA V+LDL LP +G+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 EVLK++R + TPV+I +A + R++GLN GADDY+ KPF+LEEL AR++ALLRR Q Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 ++ T+ G + FD ++ + G +AL+ RE VL ALI + + + +L ++++ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 WNEEVDSNTIEVHIHALRKKIAPD-----VVRNIRGLGYTM 216 + + IE++IH LRKK+ + + +RGLGY + Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLL 221 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 1 MRLLLVEDDFMLGDSVRKGFYPLGFVVDWMRDGISAQAALEVESYAAVVLDLGLPGRNGL 60 M +LLVED+ GD +R+G GFVVDW++ G+ Y ++LD+ LPG NG Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 EVLKKLRQDRDNTPVIIASACDAVQQRIAGLNAGADDYVNKPFDLEELAARIRALLRRVQ 120 ++L++LR+ D TPV+ +A D V+ R+ GL GADDY+ KPF EL AR+R LLRR Sbjct: 61 DILRELRRTHD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 Query: 121 GRQSSTMVHGEVEFDPATQVVRHRGRRVALSAREMLVLSALIEKPEAVLSRAQLVERIYG 180 R+ + + +V D + V G+R+ L+A+E +L LI +P VLSR Q+ +++ Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 Query: 181 WNEEVDSNTIEVHIHALRKKI----APDVVRNIRGLGYTM 216 N + D+N ++V + LR K+ ++ + G+GY Sbjct: 180 MNFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 624,716 Number of extensions: 23350 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 27 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)