BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0946.p (462 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 243 3e-65 gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 186 4e-48 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 184 9e-48 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 177 1e-45 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 177 2e-45 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 175/446 (39%), Positives = 256/446 (57%), Gaps = 18/446 (4%) Query: 2 SIRNRLLCWLLSGLAVLSLLYMLADYQTDHALLTDIYDDQMIQVALSVPDELIQAPQRAD 61 S+RN+LL WL GL + +L +A Y I+D QM Q+A S+P + +P Sbjct: 3 SVRNKLLLWLGLGLFSIIVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAF-SPISPG 61 Query: 62 AELPGYESDDCILQIWAHNGDLLYRTNRDIVLPPFSQAGFSTVHWHGAPWRIYVRKTGQH 121 + P E D+ ++QIW G ++Y ++ +P ++ GF+ V WR+Y + G Sbjct: 62 QQFPELE-DEIMMQIWDSRGAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGST 120 Query: 122 LVQVAQSLDGRREIAITHALHSLPPLLLFLLLMALFIRRTVDRSLHSLHLLSHQVAARSP 181 +VQVAQ R EIA A+ ++ PLLL L+ + V R L + + +VAAR Sbjct: 121 VVQVAQPQSARDEIAAQMAVKTVVPLLLLFPLIGVLSWVAVSRGLAPVRKAAAEVAARDM 180 Query: 182 DSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSHRHFIADASHELRTPLAALQIQALV 241 +SL+ + + G +++PL ALN LL RL A ++ R F+ADA+HELRTPL AL++Q + Sbjct: 181 NSLQPLADVGMPQEIQPLTHALNDLLARLKHATETQRAFVADAAHELRTPLTALRLQTQL 240 Query: 242 VEQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLENGALEEHHAEIDLHALVRQAVI 301 E+++ + +AA DLK G++RT+HLV+QLLT++R E A+ ++DL AL+ V Sbjct: 241 AERAVDEEERRAAFADLKNGLERTTHLVHQLLTLARQEPDAMS--FTQVDLRALLGSVVG 298 Query: 302 DLLPLARSHAINLG-AEQLDST---TVVAAPDQLGILVRNLIDNAVRYTPTGGQVDVSLR 357 DL +A I+LG ++Q D V D L IL NL+DNA+RYTP GG VDV + Sbjct: 299 DLSSVAEHGGIDLGLSDQGDDGRPLRVTGNADALRILFNNLVDNALRYTPAGGVVDVGVD 358 Query: 358 V-VEGRALLEVEDSGPGIPVEERQRVFERFYRRQVQQ-------SEGSGLGLAIVREIAR 409 + G + V+DSGPGI E RVF+RFYR Q Q + GSGLGLAIVR+IA Sbjct: 359 LSTAGYCTVVVQDSGPGIAESELPRVFDRFYRAQHSQEGSGSRAAFGSGLGLAIVRQIAD 418 Query: 410 QHGLRLGLDDSPRLGGLRVSVAFEIS 435 H + + L ++ GL+ V F +S Sbjct: 419 LHRVPVELRNTGH--GLQARVVFPLS 442 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 186 bits (471), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/340 (38%), Positives = 188/340 (55%), Gaps = 7/340 (2%) Query: 93 LPPFSQAGFSTVHWHGAPWRIYVRK--TGQHLVQVAQSLDGRREIAITHALHSLPPLLLF 150 LP GF T+ H +R+YV+ G+ L +AQ D R+ IA A +L P ++ Sbjct: 103 LPADLAEGFHTLLLHHEYFRVYVQALPNGKRLA-LAQETDLRQHIAQRSAWRALWPFVVL 161 Query: 151 LLLMALFIRRTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERL 210 L+ L ++R + R L L ++ +R D L+ I E +V+ A+N LL R+ Sbjct: 162 APLLLLAVQRIIKRLFAPLQALRQEIDSRGEDDLQPIAERLLPREVQAFVAAINGLLARV 221 Query: 211 GIALKSHRHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVN 270 + + R F+ADA+HELRTPL AL +QA + ++ S + L L+ G+QR LV Sbjct: 222 EAGMAAQRRFVADAAHELRTPLTALSLQAERLGRAPMSETARERLTRLETGLQRARQLVT 281 Query: 271 QLLTVSRLENGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVVAAPDQ 330 QLL ++R + A LH ++R+ + +LLPLA+ I+LG + V+ P + Sbjct: 282 QLLALARAQTPAGAALQ-PCSLHQVLREVIEELLPLAQCKQIDLGLDGERDACVLTQPQE 340 Query: 331 LGILVRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYRRQ 390 L L+RNLIDNA+ YTP GG V + + LE+ D+GPGI ER+RVF+ FYR Sbjct: 341 LAQLLRNLIDNAIAYTPAGGAVSLRMERHAQWVALEICDTGPGIAASERERVFQPFYRID 400 Query: 391 VQQSEGSGLGLAIVREIARQHG--LRLGLDDSPRLGGLRV 428 +GSGLGLAIV+ IAR+ G LRL D + GLRV Sbjct: 401 -PSGQGSGLGLAIVQSIARRLGVTLRLEAADPAQQSGLRV 439 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 184 bits (468), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 228/469 (48%), Gaps = 37/469 (7%) Query: 2 SIRNRLLCWLLSGLAVLSLLYMLADYQTDHALLTDIYDDQMIQVALSVPDELIQAPQRAD 61 S+R++L+ WLL L +L + ++ Y + YD ++ ++ + + Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 62 AELP-----GYESDD---CILQIWAHNGDLLYRTNRDIVLPPFSQAG--------FSTVH 105 A++P +E+D+ ++ NG+L+ + +PP + F Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 106 WHGAPWRIYV--------RKTGQHLVQVAQSLDGRREIAITHALHSLPPLLLFLLLMALF 157 +H P RI G L+QV ++++GR + +L + + AL Sbjct: 130 YHDQPVRIAALLQPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGTLVTVAALL 189 Query: 158 IRRTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSH 217 + V L L L +V +R+P L ++RPL +A+N + RL + + Sbjct: 190 VWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRLQALISAQ 249 Query: 218 RHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAA-LNDLKRGIQRTS----HLVNQL 272 R FIADASH+LRTPL L+ Q+ + + L Q AA L DL G+ RT+ HL N+L Sbjct: 250 RRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAAVHLANRL 309 Query: 273 LTVSRLENGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQLDSTTVVAAPDQLG 332 LT++R E+GA E + L RQ ++L A S I L E+ ++ A L Sbjct: 310 LTLARAEHGAAEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGDVSIEANALLLH 369 Query: 333 ILVRNLIDNAVRYTPTGGQVDVSLRVVEGR-----ALLEVEDSGPGIPVEERQRVFERFY 387 L+ NL+DNA+RYTP GG V + +R ALLEVEDSGPGIP ER++VFE FY Sbjct: 370 ELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAEREKVFEPFY 429 Query: 388 RRQVQQ---SEGSGLGLAIVREIARQHGLRLGLDDSPRLGGLRVSVAFE 433 R Q G+GLGL+IVREIA H + LD + GL V + F+ Sbjct: 430 RAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRIVFQ 478 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 181/329 (55%), Gaps = 9/329 (2%) Query: 123 VQVAQSLDGRREIAITHALHSLPPLLLFLLLMALFIRRTVDRSLHSLHLLSHQVAARSPD 182 VQV ++L+ R ++A + P + L + + + R L L L ++ AR PD Sbjct: 55 VQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPD 114 Query: 183 SLEQIGEHGHCSDVRPLAKALNSLLERLGIALKSHRHFIADASHELRTPLAALQIQALVV 242 L I ++ PL ++LN +L RL + + FIADA+H+++TPLA +++Q+ + Sbjct: 115 DLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELA 174 Query: 243 EQSLGSGQEQAALNDLKRGIQRTSHLVNQLLTVSRLENGALEEHHA-EIDLHALVRQAVI 301 + + +L L + + + LVNQLL+++R EN + ++L+ L R V Sbjct: 175 LRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQ 234 Query: 302 DLLPLARSHAINLGAEQLDSTTVVAA-PDQLGILVRNLIDNAVRYTP--TGGQVDVSLRV 358 D +P++ + I+LG EQ D ++ P L L+ NL+DNA+ YTP G+V V R Sbjct: 235 DWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRART 294 Query: 359 VEGR--ALLEVEDSGPGIPVEERQRVFERFYRRQVQQSEGS--GLGLAIVREIARQHGLR 414 EG A+LEVED+GPGIPV ER VFERFYR S GS GLGLAIVREIA+QH Sbjct: 295 DEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAA 354 Query: 415 LGLDDSPRLGGLRV-SVAFEISTRPAPRS 442 L + +PR + F +S R PR+ Sbjct: 355 LEITSNPRSTDPKYPGCVFRVSFRMMPRT 383 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 182/345 (52%), Gaps = 16/345 (4%) Query: 101 FSTVHWHGAPWRI--YVRKTGQH------LVQVAQSLDGRREIAITHALHSLPPLLLFLL 152 +ST ++G P R+ Y+R V V Q++ GR+E+ SL ++ LL Sbjct: 113 YSTTSFNGKPLRVVSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLL 172 Query: 153 LMALFIRRTVDRSLHSLHLLSHQVAARSPDSLEQIGEHGHCSDVRPLAKALNSLLERLGI 212 L + + L L L ++A R PDSL + G ++RP+ +A+N + RL Sbjct: 173 LAISLVVLGLTMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNA 232 Query: 213 ALKSHRHFIADASHELRTPLAALQIQALVVEQSLGSGQEQAALNDLKRGIQRTSHLVNQL 272 + + F+ADA+H+LRTPLA + Q Q + L L+ G + + L N+L Sbjct: 233 QVTVQKRFVADAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKL 292 Query: 273 LTVSRLE-NGALEEHHAEIDLHALVRQAVIDLLPLARSHAINLGAEQ-LDSTTVVAAPDQ 330 L +S+ E + + A +DL A+ + +L LA I+LG E L+S V Q Sbjct: 293 LLLSQAEASDSSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQ 352 Query: 331 LGILVRNLIDNAVRYTPTGGQVDVSLRVVEGRALLEVEDSGPGIPVEERQRVFERFYRRQ 390 L ++ NLIDNA+RYTP GG+V V L + ++ V D+GPGIP E R+RVFERFYR Sbjct: 353 LMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNA 412 Query: 391 VQQSEGSGLGLAIVREI--ARQHGLRLGLDDSPRLG-GLRVSVAF 432 GSGLGLAIVREI A Q +RL D+P G GL +V+ Sbjct: 413 APDQPGSGLGLAIVREIVQASQGSIRL---DAPAQGSGLVATVSL 454 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,298,822 Number of extensions: 53589 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 275 Number of HSP's successfully gapped: 37 Length of query: 462 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 373 Effective length of database: 1,198,455 Effective search space: 447023715 Effective search space used: 447023715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)