BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0944.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 933 0.0 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 660 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 519 e-148 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 482 e-137 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 468 e-133 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/515 (93%), Positives = 497/515 (96%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFG 120 GSLPPLRLNELELVTAVTPQER+AAN+AIK RLDAL +QR +FEQRMSEP+EKEQYAQF Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQADA 180 KNL AY+KVDEQLAEMAANQQYDETRALF G+SAKLY +MV NL+AIVKINTSGSAQAD Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 EASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRP 240 EAS VFRGAQRWIVGLLAATV I SLLAF+VA NVSRPLKEAV+IAQRVARGDLTLRIRP Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 AGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AGRDETG LMEALRAMN+SLRDIVSEVRQGTDTI TAS+EIARGNLDLSNRTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTVTQNADNARQANQLAATASDIAS GG+VVGQVVQTMEGITESSRRIAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SVQKVSAGS LVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVEQAAAAADSLKGQA NLAAVVGKFKL+ Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/515 (68%), Positives = 424/515 (82%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 M WF NL IAKKL +SFA VI LT++ GLFAI+ELK VN+AS ++ + W+PT+ AA+ +Q Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFG 120 SLP +R++EL++VTA TP ER A +AIK+RLD LAKQR +E ++SE EEK Y +F Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQADA 180 K+ A Y+++D++LA ++A + +E RALFKG+S K + +M+ N++ I+K+N +GS ++D Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 EASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRP 240 A V+R A WI+GLLAA V I LA +VA VSRPL EAV +A+RVA+GDLT+ IR Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 DETG LM +LRAMNDSL+ IV EVR GTDTI TAS EIA GNLDLS+RTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LT+TV QNADNARQANQLAA+ASDIA+ GG VVGQVVQTMEGITESS RIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV+KV AGS+LVERAG+TM+EVVASVRRVTDVVAEISAA+ EQS GI E+N AITQMDE Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVE+AAAAA SL+ QA L+ VV FKL+ Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 519 bits (1336), Expect = e-148, Method: Compositional matrix adjust. Identities = 293/515 (56%), Positives = 378/515 (73%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 M WFY+L I++KL +F VV+A+ G+F+I++L QVN AS EI + W+P++ LQ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFG 120 ++ LR EL+ + A +E + ++ +++ L + + ++SEPEEK Y + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQADA 180 K +A ++ +++ ++ + +E R L +GES K Y + ++ + +N G+ ++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 EASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRP 240 +A ++ A+ WI+ +AA + + LLA V+ ++RPL+EAV +AQRVA GDLT RI P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AG+DETG+L+ AL++MNDSL IV +VR GT TI TAS EIA GNLDLS+RTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QNADNARQANQLA +AS++AS GG VV QVV TM I SSR+IAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV +V GS+LVERAG TM+EVV SVRRVTD+V EIS+A+QEQS GI +VNLAI QMDE Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVE+AAAAA SL+ QA L VG FKLE Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 482 bits (1241), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/515 (53%), Positives = 362/515 (70%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 M WFYNL IA KL +F VV+ + G F+ EL VNK+S +I W+P++DA ++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQAIKARLDALAKQRTVFEQRMSEPEEKEQYAQFG 120 +L R +++ + QE A+ + ++ L K+ + + +SEP EKE Y + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KNLAAYIKVDEQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQADA 180 +N+A Y + E+++ + Q AL S +Y + + + ++N+ G+A +DA Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 EASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRIRP 240 +A ++ A I+ L+ V + L++ +A V+RPL AV+IA++VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 A RDETG+L+EALR MN +L +IV EVRQGTDTI TAS EIA GN+DLS+RTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QN+DNARQANQLA AS++A GG VVG+VV TM I +SSR+I D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV KV GS+LV+ AG TM EVVASV+RV+D+VAEI+AA EQ+ GI ++N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVEQAAAAA +L+ QAG L+ V F+L+ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD 515 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 468 bits (1205), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/516 (52%), Positives = 366/516 (70%), Gaps = 3/516 (0%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 M WFYN IA KL L+FA V+ LT G+F+I +L +VN+A+ E+ + W+P++ + +++ Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQAIKAR-LDALAKQRTVFEQRMSEPEEKEQYAQF 119 +L +R N+ +L +++S+A + + L+ALA+ R + ++SEP EK + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 GKNLAAYIKVD-EQLAEMAANQQYDETRALFKGESAKLYAAMVANLNAIVKINTSGSAQA 178 + +I + + LA + A + DE + L G + + Y +++ +L+ + ++N GS Q+ Sbjct: 121 NARIDKFIALHGDTLAAVRAGK-LDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQS 179 Query: 179 DAEASGVFRGAQRWIVGLLAATVAIGSLLAFVVAANVSRPLKEAVEIAQRVARGDLTLRI 238 A + AQ W+V +L + G LA +A ++ PL+ A E A +A GDLT I Sbjct: 180 TRSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADI 239 Query: 239 RPAGRDETGRLMEALRAMNDSLRDIVSEVRQGTDTIATASNEIARGNLDLSNRTEQQAGS 298 DETG+L AL AMN SLR IVS+VR GTD IATAS +I+ GNLDLS+RTE+QA S Sbjct: 240 TARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASS 299 Query: 299 LEETASAMEQLTSTVTQNADNARQANQLAATASDIASHGGDVVGQVVQTMEGITESSRRI 358 LEETASAME+LTSTV QNA+NARQANQLA +AS IA GG VV QV++TM I SS++I Sbjct: 300 LEETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKI 359 Query: 359 ADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI 418 DIISVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LI Sbjct: 360 VDIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLI 419 Query: 419 DDSVQKVSAGSELVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMD 478 D+SVQ+V GS LV++AG T++EVV+SV+RVTDV++EISAA+ EQ+ GI +VN AITQMD Sbjct: 420 DNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMD 479 Query: 479 ETTQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKL 514 E TQQNAALVE+AA+A+ SL QA L+ +VG F+L Sbjct: 480 EVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,191,954 Number of extensions: 42170 Number of successful extensions: 568 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 306 Number of HSP's successfully gapped: 71 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)