BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0930.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310461|ref|YP_003774553.1| histone acetyltransferase HPA2 ...   456   e-130
gi|300310457|ref|YP_003774549.1| GNAT family acetyltransferase [...   265   2e-72

>gi|300310461|ref|YP_003774553.1| histone acetyltransferase HPA2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 295

 Score =  456 bits (1174), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/295 (76%), Positives = 249/295 (84%)

Query: 1   MQAASTHSAPQNAQATLRPMRETDLASCHALSQHLKWPHRLVDWQFHHRVSRSWAVELEE 60
           M   ST +A Q AQ TLRPMR  DLASCHA+S HL WPHRL DWQFHH+VS SWAVELE+
Sbjct: 1   MHTDSTLTAGQAAQTTLRPMRPEDLASCHAMSLHLHWPHRLADWQFHHQVSSSWAVELEQ 60

Query: 61  ADGTQSVAGSGMLYLAGADYASLGLVIIADALQGRGLGRAMMQQLLRDAGTRSVLLNATE 120
            DG +SVAGSGML   G DYASLGLVIIADALQGRGLGRAMMQ+LL+DAG+R+V+LNAT+
Sbjct: 61  PDGARSVAGSGMLCPLGEDYASLGLVIIADALQGRGLGRAMMQRLLQDAGSRNVILNATD 120

Query: 121 AGRPLYEKLGFVVTDTLSQHQSSSAQASVTLAPGTQIRALRADEAPALLALDRQASGMDR 180
           AGRPLYEKLGF VTDTLSQHQS++A+A   LA   +IR LR +EAPA LALDRQASGMDR
Sbjct: 121 AGRPLYEKLGFAVTDTLSQHQSTTARAQPVLAADARIRPLRKEEAPAFLALDRQASGMDR 180

Query: 181 SALLQALLQFAQVAVLEQDGQVKGAAMLREFGRGRVIGPVIASNVEDAKTLIAYWVNQYP 240
           S LLQ LL  A+VAVLEQ GQVKG AMLREFGRGRVIGPVIAS VEDAK LIA+WV+ YP
Sbjct: 181 STLLQPLLATAEVAVLEQAGQVKGVAMLREFGRGRVIGPVIASQVEDAKALIAHWVHAYP 240

Query: 241 GNLLRIDVPGRSGLKPWLQEIGLVCVDDVVSMCRGTPPQAHAQWRTYSIINQALG 295
           G  LRIDVPGR+GLKPWL+EIGL CVD+VVSMCRGTPP     WRTYS+INQALG
Sbjct: 241 GAYLRIDVPGRTGLKPWLEEIGLTCVDNVVSMCRGTPPSPATPWRTYSMINQALG 295


>gi|300310457|ref|YP_003774549.1| GNAT family acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  265 bits (678), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/301 (46%), Positives = 190/301 (63%), Gaps = 7/301 (2%)

Query: 1   MQAASTHSAPQNAQATL-----RPMRETDLASCHALSQHLKWPHRLVDWQFHHRVSRSWA 55
           M A STH  PQ  +A L     RPM   DLA CH LS   KWPHRL DW F  +  + + 
Sbjct: 1   MPAPSTHD-PQTVRAPLPDLLLRPMEADDLAHCHRLSLRFKWPHRLEDWNFLLQRGQGYL 59

Query: 56  VELEEADGTQSVAGSGMLYLAGADYASLGLVIIADALQGRGLGRAMMQQLLRDAGTRSVL 115
           +E  +A+    V GS +    GA +A +G++++   LQ RGLGR +MQQ        S++
Sbjct: 60  LENTDAEAPLRVVGSVVCTPYGAHHAVIGMLLVQAELQRRGLGRRLMQQAASAVQGHSLI 119

Query: 116 LNATEAGRPLYEKLGFVVTDTLSQHQSSSAQAS-VTLAPGTQIRALRADEAPALLALDRQ 174
           +NAT AG PLY++LGFV  D L Q Q SSAQ   V+L PG ++R +  ++ P LLALD Q
Sbjct: 120 VNATAAGMPLYKQLGFVQQDVLHQFQGSSAQPVLVSLPPGERVRPMGKNDVPRLLALDAQ 179

Query: 175 ASGMDRSALLQALLQFAQVAVLEQDGQVKGAAMLREFGRGRVIGPVIASNVEDAKTLIAY 234
           A+GMDRS LL ALL  ++   L++DG++ G A++R FG GRVIGPV+A + E AK LIA+
Sbjct: 180 ATGMDRSKLLLALLDMSEAVALDRDGEMLGFALVRRFGHGRVIGPVVAPDAERAKGLIAH 239

Query: 235 WVNQYPGNLLRIDVPGRSGLKPWLQEIGLVCVDDVVSMCRGTPPQAHAQWRTYSIINQAL 294
           W+N Y  + +R+DV   +GL  WL ++GL CVD V  MC+G PP      + +SI+NQAL
Sbjct: 240 WINTYSDSFIRLDVFESTGLPSWLDKLGLTCVDHVTRMCKGEPPVRDPGMQLFSIVNQAL 299

Query: 295 G 295
           G
Sbjct: 300 G 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 903,554
Number of extensions: 36012
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)