BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0928.p (430 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [H... 803 0.0 gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [H... 456 e-129 gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [H... 177 2e-45 gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase [He... 56 6e-09 >gi|300310459|ref|YP_003774551.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 430 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/430 (92%), Positives = 416/430 (96%) Query: 1 MKLESYWNDSAPLYISPSRDLPAQVDVAIVGGGFTGLSAALALAKRGASVVVLEAGPHVA 60 MKLESYW DSAPLYISP+RDLPAQVDVAIVGGGFTGLSAALALA+RGASVVVLEAGPHVA Sbjct: 1 MKLESYWTDSAPLYISPTRDLPAQVDVAIVGGGFTGLSAALALARRGASVVVLEAGPHVA 60 Query: 61 AEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVKEEQIACDFLR 120 AEASGRNGGHVNNGLAVDYAE+AAKVGVERARAWYHAYDDAVDTVARLV+EEQI CDFLR Sbjct: 61 AEASGRNGGHVNNGLAVDYAELAAKVGVERARAWYHAYDDAVDTVARLVQEEQIDCDFLR 120 Query: 121 HGKLKMATRPYQMEALQRSADRLIADGVDRDVEILDAARVRAEVQSERFHGGLLYKRSAQ 180 HGKLKMATRPYQM+ALQRSADRLIADGVD DVEILDA RV+AEVQSERFHGGLLYKRS Q Sbjct: 121 HGKLKMATRPYQMDALQRSADRLIADGVDLDVEILDAQRVQAEVQSERFHGGLLYKRSGQ 180 Query: 181 MHMGQFAYGLALAAERHGAAIHTSTEVRRLERIGQTHGHRVHTARGTVLAKQVLLATGAS 240 MHMG+FAYGLA+AAER GAAIHT TEVRRLERIGQTHGHR+HT RG VLA+QVLLATGAS Sbjct: 181 MHMGRFAYGLAMAAERQGAAIHTGTEVRRLERIGQTHGHRLHTTRGAVLARQVLLATGAS 240 Query: 241 RHGSYGSFGWLRRRIVPIGSFIVVTEPLGAERAASLLARQRTYTTVANIHHYFRMTPDTR 300 RHG+YGSFGWLRRRIVPIGSFIVVTEPLGA+RAA+LL QRTYTTVANIHHYFRMTPDTR Sbjct: 241 RHGAYGSFGWLRRRIVPIGSFIVVTEPLGAQRAATLLKHQRTYTTVANIHHYFRMTPDTR 300 Query: 301 LVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGE 360 LVFGGRARFAISSPQSDAASGE+LR+GLHETFPQLGQVRLDYCWGGLVD+TRDRLPQAGE Sbjct: 301 LVFGGRARFAISSPQSDAASGEVLRRGLHETFPQLGQVRLDYCWGGLVDVTRDRLPQAGE 360 Query: 361 RDGLYYSMGYSGHGTQMSVHMGQCMAHVMAGDAQANPWREREWPAIPGHFGPPWFLPMIG 420 RDGLYYSMGYSGHGTQMSVHMGQCMA VMAGDA ANPWREREWPAIPGHFG PWFLP++G Sbjct: 361 RDGLYYSMGYSGHGTQMSVHMGQCMAKVMAGDALANPWREREWPAIPGHFGAPWFLPLVG 420 Query: 421 LYYQLKDKLA 430 LYY+LKDKLA Sbjct: 421 LYYRLKDKLA 430 >gi|300309600|ref|YP_003773692.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 425 Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust. Identities = 239/430 (55%), Positives = 304/430 (70%), Gaps = 8/430 (1%) Query: 1 MKLESYWNDSAPLYISPSRDLP-AQVDVAIVGGGFTGLSAALALAKRGASVVVLEAGPHV 59 M+L+SYW D++P ++S ++ LP DV +VGGG TG +AALALA++GA VVV EA V Sbjct: 2 MQLKSYWLDTSPAFVSQTQTLPEGACDVVVVGGGITGSAAALALARKGARVVVCEADI-V 60 Query: 60 AAEASGRNGGHVNNGLAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVKEEQIACDFL 119 ASGRNGG NNG A DYA ++ ++GVE A Y A+D VDTV RLV+EE I C F Sbjct: 61 GGAASGRNGGMCNNGFAQDYATLSQRLGVEWANRLYRAFDAGVDTVERLVREESIDCSFA 120 Query: 120 RHGKLKMATRPYQMEALQRSADRLIADGVDRDVEILDAARVRAEVQSERFHGGLLYKRSA 179 RHGKLK+A +P ++ L RS + L+A VD D +L A++R E+ S+R+HGGLL +SA Sbjct: 121 RHGKLKLAAKPEHVDKLARSQE-LLARHVDGDTRLLSRAQLRDELGSDRYHGGLLMHKSA 179 Query: 180 QMHMGQFAYGLALAAERHGAAIHTSTEVRRLERIGQTHGHRVHTARGTVLAKQVLLATGA 239 MH+G++ GLA AA+R GA T V +E + + V T+ G + A QVLLA+G Sbjct: 180 GMHVGRYVRGLAQAAQRRGALYLERTPVLGIE--AKNGRYAVRTSAGVLHAGQVLLASGI 237 Query: 240 SRHGSYGSFGWLRRRIVPIGSFIVVTEPLGAERAASLLARQRTYTTVANIHHYFRMTPDT 299 S+ G FGW+RRRIVP+G+F++VTEPL LL QR YT N +YFR TPD Sbjct: 238 SQ---VGPFGWIRRRIVPVGAFLIVTEPLPGALLKQLLPTQRMYTDTKNFVNYFRATPDQ 294 Query: 300 RLVFGGRARFAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAG 359 RL+FGGRARFA S+PQSDA SGEILR + E FP L Q R+DYCWGG+VDMT DRLP+AG Sbjct: 295 RLLFGGRARFAASNPQSDARSGEILRAQMLEVFPALAQTRIDYCWGGMVDMTTDRLPRAG 354 Query: 360 ERDGLYYSMGYSGHGTQMSVHMGQCMAHVMAGDAQANPWREREWPAIPGHFGPPWFLPMI 419 +RDGLYYSMGYSGHGT M+ MG MA +M G A+ NPW++ +WPAIPGHFG PWFLP + Sbjct: 355 QRDGLYYSMGYSGHGTHMATLMGSMMAEIMDGHAELNPWKDFDWPAIPGHFGKPWFLPFV 414 Query: 420 GLYYQLKDKL 429 G +Y+LKD+L Sbjct: 415 GAWYRLKDRL 424 >gi|300310497|ref|YP_003774589.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] Length = 433 Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 143/403 (35%), Positives = 196/403 (48%), Gaps = 23/403 (5%) Query: 16 SPSRDLPAQVDVAIVGGGFTGLSAALALAKRGASVVVLEAGPHVAA-EASGRNGGHVNNG 74 +P A+ DVAIVG G+TGLS AL LA+ G SV VL+A H ASGRNGG V G Sbjct: 24 APPLQASARYDVAIVGAGYTGLSTALHLAQAGVSVCVLDA--HAPGWGASGRNGGQVIPG 81 Query: 75 LAVDYAEVAAKVGVERARAWYHAYDDAVDTVARLVKEEQIACDFLRHGKLKMATRPYQME 134 L D ++ G A A A DTV L+ I C+ R G ++ P M Sbjct: 82 LKYDPDQLRVMFGSAVADPLIAAIGSAADTVFDLIARHGIECEAQRAGWIQPTHSPKMMR 141 Query: 135 ALQRSADRLIADGVDRDVEILDAARVRAEVQSERFHGGLLYKRSAQMHMGQFAYGLALAA 194 AL+ A + +A+G +++D A V + + + GG +R+ +H ++ GLA AA Sbjct: 142 ALEARARQWMAEGA--PAQLMDGAEVTRRIGTGAYVGGWKDERAGSLHPLKYCRGLAQAA 199 Query: 195 ERHGAAIHTSTEVRRLERIGQTHGHRVHTARGT----VLAKQVLLATGASRHGSYGSFGW 250 +R G IH T V RLER + G R+H G + A++V+LAT Y W Sbjct: 200 QRLGVVIHGDTRVTRLER--RQGGWRLHGPSGEQGPHIDAERVVLATNG-----YTDDLW 252 Query: 251 --LRRRIVPIGSFIVVTEPLGAERAASLLARQRTYTTVANIHHYFRMTPDTRLVFGGRAR 308 LR+ ++ SFIV T PL AS+L + + Y+R RL+ GGR Sbjct: 253 PHLRQSVIAANSFIVATRPLPPALGASILPGGEVTSDSRRLLLYYRRDAQGRLLMGGRGP 312 Query: 309 FAISSPQSDAASGEILRQGLHETFPQLGQVRLDYCWGGLVDMTRDRLPQAGER-DGLYYS 367 F +D A L + + FPQL V +Y W G V +TRD LP E GL + Sbjct: 313 FGEPQGPADFAH---LERSVALLFPQLAGVEYEYRWSGRVAITRDFLPHVHEPAPGLSIA 369 Query: 368 MGYSGHGTQMSVHMGQCMAHVMAGDA-QANPWREREWPAIPGH 409 +GY+G G M+ MGQ +A + G A A P+ IP H Sbjct: 370 LGYNGRGIAMATMMGQRLAQRLIGPAGTAFPFPVSTIAPIPLH 412 >gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 402 Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/197 (30%), Positives = 89/197 (45%), Gaps = 25/197 (12%) Query: 28 AIVGGGFTGLSAA--LALAKRGASVVVLEAGPHVAAEASGRNGGHVNNGLAVDYAEVAAK 85 A++GGG GL+ A L L V V E VA S N G V+ GL + + A Sbjct: 7 AVIGGGINGLAVARQLLLDDPDVRVTVFEKEEAVAQHQSSHNSGVVHAGLYYEPGGLKAT 66 Query: 86 V---GVERARAWYHAYDDAVDTVARLVKEEQIACDFLRHGKLKMATRPYQMEALQRSADR 142 + GVE + + EQ A + GK+ +A ++ L+ + Sbjct: 67 LCRRGVELVKRYC----------------EQNALPYDECGKVVVALGEEELPRLEAIYRK 110 Query: 143 LIADGVDRDVEILDAARVRAEVQSERFHGGLLYK-RSAQMHMGQFAYGLALAAERHGAAI 201 +A+GV DVE++DAAR+R E++ LY R+A + GQ A +A E G I Sbjct: 111 ALANGVP-DVEMIDAARLR-EIEPNCVGLRALYSPRTAIVSYGQIAQRMAQEIEERGGTI 168 Query: 202 HTSTEVRR-LERIGQTH 217 + VRR +ER Q H Sbjct: 169 RLNASVRRVIERGDQVH 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,463,386 Number of extensions: 64958 Number of successful extensions: 321 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 310 Number of HSP's successfully gapped: 4 Length of query: 430 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 342 Effective length of database: 1,203,190 Effective search space: 411490980 Effective search space used: 411490980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)