BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0925.p (458 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310456|ref|YP_003774548.1| family II aminotransferase [Her... 888 0.0 gi|300312816|ref|YP_003776908.1| aminotransferase class III prot... 231 1e-61 gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate amino... 210 2e-55 gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-ox... 198 6e-52 gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferas... 139 5e-34 >gi|300310456|ref|YP_003774548.1| family II aminotransferase [Herbaspirillum seropedicae SmR1] Length = 458 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/458 (93%), Positives = 446/458 (97%) Query: 1 MQTSSLAALDRSHLIHPVASFREHEELGPIILKSGHGAYLTDQQDKQLLDAFSGLWCVNT 60 MQTS+LAALDR HLIHPV S REHEELGP+ILKSG GAYLTD QDKQLLDAFSGLWCVNT Sbjct: 1 MQTSALAALDRRHLIHPVTSLREHEELGPLILKSGQGAYLTDHQDKQLLDAFSGLWCVNT 60 Query: 61 GYGQESVIRAATEQMQRLPYATGYFHFASEPAILLAKKLVDISPASLQHVYFTLGGSDAV 120 GYGQESVIRAATEQMQRLPYATGYFHFASEPAILLAKKLVDISPASLQHVYFTLGGSDAV Sbjct: 61 GYGQESVIRAATEQMQRLPYATGYFHFASEPAILLAKKLVDISPASLQHVYFTLGGSDAV 120 Query: 121 DAAIRYITHYHNSIGKPTKKNFISLQRGYHGSSSVGAGLTALPNFHFHFDLPLPTQHYLP 180 DAAIRYITHYH+SIGKP K++FISLQRGYHGSSSVGAGLTALPNFH+HF+LPLPTQHYLP Sbjct: 121 DAAIRYITHYHHSIGKPGKQHFISLQRGYHGSSSVGAGLTALPNFHYHFNLPLPTQHYLP 180 Query: 181 SPYPYRSELQDDAAIIAASVQALREKVAELGADNVAAFFCEPIQGSGGVVVPPKGWLKAM 240 SPYPYRSELQ D AIIAASVQALR+KVAELGADNVAAFFCEPIQGSGGVVVPPKGWLKAM Sbjct: 181 SPYPYRSELQGDEAIIAASVQALRDKVAELGADNVAAFFCEPIQGSGGVVVPPKGWLKAM 240 Query: 241 QLACNELDILFVVDEVITGFGRTGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSDR 300 QLACNELDILFVVDEVITGFGRTGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSDR Sbjct: 241 QLACNELDILFVVDEVITGFGRTGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSDR 300 Query: 301 VYQGIADGAPMSTVVGHGQTYSAHPVSAAVALEVLRLYEEGGLLENGRRLEPVFAGGLRA 360 VY GIADGAPMSTVVGHGQTYSAHPVSAAVALEVLRLYEEGGLL+NGRRLEPVFAGGLRA Sbjct: 301 VYNGIADGAPMSTVVGHGQTYSAHPVSAAVALEVLRLYEEGGLLDNGRRLEPVFAGGLRA 360 Query: 361 LLDHPLVGDARSRGLLGALELVADKTTKARFAPELKLHERIFQVAYRHGLIFRAFGDNIL 420 LL HPLVGDARSRGLLGALELVADK TKARFAPELKLH+RIFQ AYRHGL+FRAFGDNIL Sbjct: 361 LLAHPLVGDARSRGLLGALELVADKQTKARFAPELKLHDRIFQAAYRHGLVFRAFGDNIL 420 Query: 421 GFAPALCYTEQDFALMFARLRAILDEVLAQPDVRQAVK 458 GFAPALCYT++DFALMFARL+AILDEVLAQP+VRQAV+ Sbjct: 421 GFAPALCYTQEDFALMFARLKAILDEVLAQPEVRQAVR 458 >gi|300312816|ref|YP_003776908.1| aminotransferase class III protein [Herbaspirillum seropedicae SmR1] Length = 440 Score = 231 bits (589), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 146/419 (34%), Positives = 224/419 (53%), Gaps = 17/419 (4%) Query: 34 SGHGAYLTDQQDKQLLDAFSGLWCVNTGYGQESVIRAATEQMQRLPYATGYFHFASEPAI 93 +G G L DQ K+ +DA G G+G VI A +Q+ L YA F F + PA Sbjct: 18 AGEGMELIDQDGKRYIDASGGAAVSCLGHGHPRVIEAIRKQVGELAYAHTSF-FTTAPAE 76 Query: 94 LLAKKLVDISPASLQHVYFTLGGSDAVDAAIRYITHYHNSIGKPTKKNFISLQRGYHGSS 153 LA L D +P SL HVYF GGS+AV+AA++ Y+ +G+P +++ I+ ++ YHG++ Sbjct: 77 ELAAMLADAAPGSLNHVYFLSGGSEAVEAALKLARQYYVEVGQPQRRHIIARRQSYHGNT 136 Query: 154 SVGAGLTALPNFHFHFDLPLPTQHYLPSP---YPYRSELQDDAAIIAASVQALREKVAEL 210 +GA + +P+ + + SP Y R++ + D + L +K+ L Sbjct: 137 -LGALAIGGNAWRREMFMPMLIEAHHVSPCYAYRNRADGESDVQYVQRLADELEQKILSL 195 Query: 211 GADNVAAFFCEPIQGSGGVVVPPKG-WLKAMQLACNELDILFVVDEVITGFGRTGPMFAC 269 GAD V AF E + G+ VPP G + + ++ C++ +L ++DEV++G GRTG +FAC Sbjct: 196 GADQVIAFVAETVVGATAGAVPPVGDYFRKIRAVCDKYGVLLILDEVMSGMGRTGYLFAC 255 Query: 270 LDEDVQPDLMTMAKGLTAGYAPMGAVMMSDRVYQGIADGAPMSTVVGHGQTYSAHPVSAA 329 ++ V PD++ +AKGL AGY P+GA++ SD +Y + G S HG TY H + A Sbjct: 256 EEDGVVPDIVVIAKGLGAGYQPIGAMICSDHIYDAVLRG---SGFFQHGHTYIGHATACA 312 Query: 330 VALEVLRLYEEGGLLENGRRLEPVFAGGLR-ALLDHPLVGDARSRGLLGALELVADKTTK 388 A+ V + +E LLEN R+ LR A D VGD R RGL +ELVA++++K Sbjct: 313 AAVAVQKTIQEERLLENVRQRGEQLRSELRQAFGDQAHVGDIRGRGLFVGVELVAERSSK 372 Query: 389 ARFAPELKLHERIFQVAYRHGLIFRAFGDNILG-------FAPALCYTEQDFALMFARL 440 +P+L+ H R+ A + GL+ G I G AP + D + + RL Sbjct: 373 LPLSPDLRTHARVKAEAMKRGLLVYPMGGTIDGKNGDHILLAPPFIASSNDISEIVQRL 431 >gi|300313929|ref|YP_003778021.1| omega-amino acid/pyruvate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 442 Score = 210 bits (534), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/434 (32%), Positives = 207/434 (47%), Gaps = 42/434 (9%) Query: 29 PIILKSGHGAYLTDQQDKQLLDAFSGLWCVNTGYGQESVIRAATEQMQRLPYATGYFHFA 88 P +L S G + D +LD +GLWCV G+ ++ A + + L YA F Sbjct: 29 PRMLVSAEGMHYRDDAGNTILDGTAGLWCVPLGHAHPKIVSAVQKSVATLDYAPS-FQLG 87 Query: 89 SEPAILLAKKLVDISPASLQHVYFTLGGSDAVDAAIRYITHYHNSIGKPTKKNFISLQRG 148 A LA++L + +V++T GS+AVD A++ YH + G T+ I +RG Sbjct: 88 HPSAFELAERLKAYTGNRFGNVFYTGSGSEAVDTALKIALAYHRAKGNATRTRLIGRERG 147 Query: 149 YHG------------------SSSVGAGLTALPNFHFHFDLPLPTQHYLPSPYPYRSELQ 190 YHG S+++ G+ LP+ H L + Y + L Sbjct: 148 YHGVGFGGMSVGGIGGNRKTFSTALLPGVDHLPHTH-----NLEKNAFTKGEPEYGAHLA 202 Query: 191 DDAAIIAASVQALREKVAELGADNVAAFFCEPIQGSGGVVVPPKGWLKAMQLACNELDIL 250 D+ L V A N+AA EP+ GS GV++PPKG+LK ++ C + IL Sbjct: 203 DE----------LERLVTLHDASNIAAVIVEPVAGSTGVLIPPKGYLKRLREICTKHGIL 252 Query: 251 FVVDEVITGFGRTGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSDRVYQGIADGAP 310 + DEVITGFGR G FA DV+PD+ T AKGLT G PMGAV + ++ +G P Sbjct: 253 LIFDEVITGFGRLGTPFASDYFDVEPDIFTTAKGLTNGVVPMGAVFVKPEIHDAFMNG-P 311 Query: 311 MSTVVGHGQTYSAHPVSAAVALEVLRLYEEGGLLENGRRLEPVFAGGLRALLDHPLVGDA 370 + HG TYS HP++ A L L +++ G+LEN + + F AL P V D Sbjct: 312 DGIELFHGYTYSGHPLACAAGLASLEVFQTEGVLENAQAVADYFQEAAHALRGLPHVIDV 371 Query: 371 RSRGLLGALELVADKTTKARFAPELKLHERIFQVAYRHGLIFRAFGDNILGFAPALCYTE 430 R+ GL+ +EL + A + F A+ G++ R GD I+ +P L + Sbjct: 372 RTIGLIAGIELASIPGRVGARAYD------AFVRAFNDGILIRVTGD-IIALSPPLIINK 424 Query: 431 QDFALMFARLRAIL 444 Q +F +L AIL Sbjct: 425 QQIDELFGKLAAIL 438 >gi|300311765|ref|YP_003775857.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 448 Score = 198 bits (504), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 124/432 (28%), Positives = 206/432 (47%), Gaps = 11/432 (2%) Query: 3 TSSLAALDRSHLIHPVASFREHEELGPIILKSGHGAYLTDQQDKQLLDAFSGLWCVNTGY 62 +S+L A + HP R HE PI + HG +L D ++ LDA S W G+ Sbjct: 6 SSALVARSLRSVWHPCTQMRRHESAPPIAITRAHGLWLHDSDGRRYLDAISSWWVNLFGH 65 Query: 63 GQESVIRAATEQMQRLPYA--TGYFHFASEPAILLAKKLVDISPASLQHVYFTLGGSDAV 120 + A EQ+ +L +A G+ H EP + L+++L ++ +L H ++ G+ AV Sbjct: 66 TNTRINAALVEQLGQLEHAMLAGFTH---EPVVALSEQLAALTGQALGHCFYASDGASAV 122 Query: 121 DAAIRYITHYHNSIGKPTKKNFISLQRGYHGSSSVGAGLTALPNFHFHFDLPLPTQHYLP 180 + A++ H + G+P K FI + GYHG + G+T P F ++ L H Sbjct: 123 EIALKMSVHAWRNGGQPDKNEFICIAGGYHGETVGALGVTDTPLFRSAYESLLRPAHVAA 182 Query: 181 SPYPYRSELQDDAAIIAASVQALREKVAELGADNVAAFFCEP-IQGSGGVVVPPKGWLKA 239 SP ++ + A +AA E++ + +AA EP +Q + G+ + G+++ Sbjct: 183 SPDARQAAPGESAEEVAARALDDVERILQQRQGRIAALIVEPLVQCAAGMAMHDPGYVRG 242 Query: 240 MQLACNELDILFVVDEVITGFGRTGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSD 299 ++ C+ + DE+ G GRTG FAC V PDL+ ++KG++ GY P+ VM S+ Sbjct: 243 LRSLCDRYGAHLIADEIAVGCGRTGSFFACEQAGVWPDLLCLSKGISGGYLPLSLVMSSE 302 Query: 300 RVYQGIADGAPMSTVVGHGQTYSAHPVSAAVALEVLRLYEEGGLLENGRRLEPVFAGGLR 359 +YQ D + H +Y+ +P++ AL L ++ E +LE R PV A L+ Sbjct: 303 AIYQAFYDDDVRRGFL-HSHSYTGNPLACRAALATLAIFAEDAVLERNRAFAPVLAAALQ 361 Query: 360 ALLDHPLVGDARSRGLLGALELVADKTTKARFAPELKLHERIFQVAYRHGLIFRAFGDNI 419 L P V R RG++ A + V + + A A R+ A + ++ R G ++ Sbjct: 362 PLAQDPRVRHVRQRGMIWAYDAVLEGSAAATTA----FSRRMAAEAAQREVLVRPIGASL 417 Query: 420 LGFAPALCYTEQ 431 P L EQ Sbjct: 418 YLMPPYLLDEEQ 429 >gi|300313229|ref|YP_003777321.1| 4-aminobutyrate aminotransferase [Herbaspirillum seropedicae SmR1] Length = 456 Score = 139 bits (350), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 120/421 (28%), Positives = 187/421 (44%), Gaps = 31/421 (7%) Query: 29 PIILKSGHGAYLTDQQDKQLLDAFSGLWCVNTGYGQESVIRAATEQMQRLPYATGYFHFA 88 PI + G D +D +G+ + G V+ A +Q + L ++ Sbjct: 48 PIAMDQAFGVTFKDPDGNTFIDLSAGVGVSSVGRCNPRVVEAIRKQSESLMHS---MEVN 104 Query: 89 SEPAILLAKKLVDISPASLQH---VYFTLGGSDAVDAAIRYITHYHNSIGKPTKKNFISL 145 S LA K+ +I P L+ +FT GGSDA++AA+++ + I+ Sbjct: 105 SSKRTELAAKISEIMPDGLRGDCITFFTQGGSDALEAAVKFAKRVTG------RHQIIAF 158 Query: 146 QRGYHGSSSVGAGLTALPNFHFHFDLPLPTQHYLPSPYPYR---SELQDDAAIIAASVQA 202 GYHG + LT + F + + P PY YR A IA Sbjct: 159 HGGYHGIWNASNALTTGTAYRKGFGPFMGGVIHAPYPYAYRFPFDTSHKSAEQIAGEYVD 218 Query: 203 LREKVAELGADNVAAFFCEPIQGSGGVVVPPKGWLKAMQLACNELDILFVVDEVITGFGR 262 AD+VAA EP+QG GG V P +L+ ++ AC+ L +VDEV G GR Sbjct: 219 YLLNTPYTAADDVAAVIVEPVQGEGGYVPPSPEFLQILRKACDRSGALLIVDEVQAGAGR 278 Query: 263 TGPMFACLDEDVQPDLMTMAKGLTAGYAPMGAVMMSDRVYQGIADGAPMSTVVGHGQTYS 322 TG M+A V+PD++T KG+ G PM ++M + I DG+ T++ Sbjct: 279 TGKMWAVEHSGVKPDMLTFGKGI-GGDMPMAGLVMRSDLAAKIPDGS-------QPNTFA 330 Query: 323 AHPVSAAVALEVLRLYEEGGL-LENGRRLEPVFAGGLRALLDHPLVGDARSRGLLGALEL 381 A+ +SAAVAL + + ++ L L N + A + P VG+ R RGL+ +EL Sbjct: 331 ANSISAAVALTNISILQDPRLDLVNRAHTLGLEAQERIRSFNSPWVGEVRGRGLMIGIEL 390 Query: 382 VADKTTKARFAPELKLHERIFQVAYRHGLIFRAFG--DNILGFAPALCYTEQDFALMFAR 439 V ++ T+ + E KL ++ HG++ G N++ P+L +LMF Sbjct: 391 VENRETREPLSRE-KLG-KLMDYVVGHGVLMIPCGRYTNVMRVMPSLTIPR---SLMFKG 445 Query: 440 L 440 L Sbjct: 446 L 446 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,547,970 Number of extensions: 70298 Number of successful extensions: 222 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 10 Length of query: 458 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 370 Effective length of database: 1,203,190 Effective search space: 445180300 Effective search space used: 445180300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)