BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0924.p (164 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 334 3e-93 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 107 7e-25 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 103 5e-24 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 89 2e-19 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 80 1e-16 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 334 bits (856), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 163/164 (99%), Positives = 163/164 (99%) Query: 1 MMTNGALKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGA 60 MMTNGALKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGA Sbjct: 1 MMTNGALKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGA 60 Query: 61 YIRLEKLADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRS 120 YIRLEKLADVQIVFTEVTLSDHRREDFAKFES IRNVDEIIECHLVSGGYDYLLKFMTRS Sbjct: 61 YIRLEKLADVQIVFTEVTLSDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRS 120 Query: 121 VVHYQSVIESLLEQNLRIEKYFSYIVIKSPFVKHHYPLEKFIQS 164 VVHYQSVIESLLEQNLRIEKYFSYIVIKSPFVKHHYPLEKFIQS Sbjct: 121 VVHYQSVIESLLEQNLRIEKYFSYIVIKSPFVKHHYPLEKFIQS 164 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 107 bits (266), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 88/140 (62%) Query: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 LD+I +IL LQ + RI+NV LA V LSP+ CL RV++L++AGYI GY A + E L Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 69 DVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 +VF EV L + FA+F+ ++++ EI+ECH+V+GG+DYL+K + + Y+ + Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 129 ESLLEQNLRIEKYFSYIVIK 148 L Q + + +Y V++ Sbjct: 124 GKSLLQLKGVRETHTYAVME 143 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 103 bits (258), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 54/140 (38%), Positives = 85/140 (60%) Query: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 LD++D RIL LQ++ RI+ L + VGLS +PC+ RV+R+E+ G I+GY A + E L Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 69 DVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 +VF E+TL+ F +F + + E+ ECHLVSG +DYL+K R + Y+ ++ Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 129 ESLLEQNLRIEKYFSYIVIK 148 +L Q + SY+V++ Sbjct: 131 GDILLQLPGAAQSKSYVVME 150 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 89.0 bits (219), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/111 (45%), Positives = 67/111 (60%) Query: 7 LKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEK 66 ++LD DLRIL LQ+NS I+N+ LA + LSPSP L RVKRLE G IS Y A Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 67 LADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFM 117 L VF +V L E A+FE+ + DE++E +L++G DYLL+ + Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIV 111 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 79.7 bits (195), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/119 (35%), Positives = 65/119 (54%) Query: 7 LKLDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEK 66 + LDR+D RIL LQ++ RI N LA +G+S + C KRL + GY+ A + EK Sbjct: 1 MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60 Query: 67 LADVQIVFTEVTLSDHRREDFAKFESYIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQ 125 L +V V L E FA+FE +R++ + EC L++G +DY +K + + + Sbjct: 61 LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFN 119 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 444,322 Number of extensions: 15706 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 9 Length of query: 164 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 86 Effective length of database: 1,250,540 Effective search space: 107546440 Effective search space used: 107546440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)