BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0923.p (676 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310454|ref|YP_003774546.1| flagellar hook-associated prote... 1097 0.0 gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 pro... 894 0.0 gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herb... 729 0.0 >gi|300310454|ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/676 (81%), Positives = 633/676 (93%), Gaps = 3/676 (0%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLQTKQSGFNTLISAYGSLKNALSSY 60 MATSTGTISTSAGPLDV+TLVNQLI+VESKS+LTPL+ K+S FNTLISAYGSLKNA +SY Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QTALKAMTAASFSAQKSTLTNAGTGSNLTTDPFTADANSDDSTKALAQKLQSRGYSSGTT 120 Q+ALK +TAASFSAQK+TL+NAGTG+NLTTDPFTAD N+D+STK LAQKLQS G+++G T Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 FSSGDTIAIKIGTNQPTFITLKADATMAGLRDTINASKAGVTASITTDANGDHLVLESNS 180 F++GD++AIK+GTNQPTFITL+A+AT+AG+RD INA+KAGVTASITTD +GDHLVLESN+ Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 TGTANTIKVSANNSMSDMSYDPS--VAGSTTQIQAPRDATKAAAGQYSIGVSQLAQAVKV 238 GTANTIK++ANNS+S ++YDPS V+ + TQIQAPRDA+KAAAG+Y+I V+QLAQAVKV Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 239 SSAGIAPGSTFDNGVLAIKTGNGSTVLIQPKTNSLAGVRDAINASEAGVNASIVSDGTND 298 SSAGIAPGSTFDNGVLAIKTGNGST +IQPKTNSLAGVRDAINAS+AGVNASIV+DGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 299 HLVLTAKDTGAANNLRVSGTGNFSVFNFDPSGTVTSTGVDTSKTYSNGNLALQVGNKSFT 358 HLVLTAKD G+AN LRV+GTGNF+ FNFDPSGT+T+TGV T++TYS+G+LALQVG+KSFT Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 359 ITPTDLDGSGAIGLNDVMKAINNANTGVTASISNDSSKDHLVLTPTGTDAIQLTGNNDYA 418 I PTDLDGSGAIGLNDVMKAIN+ANTGVTASI+ND SKDHLVLTP+GTDA++LTG DY+ Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSGTDAVKLTGAGDYS 420 Query: 419 DLVGSSMGQLAKAQDAKLTIDGVAVTSTSNKVSNAISGVTLNLSKVTTAADNFTLAITND 478 DL GSSMGQLAKAQDAKLT+DGV VTSTSNKV+N ISGVTLNLSKVTT+ADNF+L+I ND Sbjct: 421 DLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSINND 480 Query: 479 TSGVSTAANNFVSAYNTLAKAVAGLTKQTPSTTKGQASTGSPLAAESSVLSMMNQIRSTM 538 TSG+STAAN FV+AYNTLAKAVA LTKQTPSTTKGQASTGSPLA+ESSVL++M Q+R+TM Sbjct: 481 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM 540 Query: 539 LGALGDDGGTNLSQVGISFQKDGTLALDASKLTTAAGKDFEGVSKLFT-GSGGVVPKLQK 597 LGALGD+G TNLSQ+GISFQKDGTLALDA+KLT AA KDF+G+++LFT + GVVPKLQK Sbjct: 541 LGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQK 600 Query: 598 LMDSILGDNGTLATKTKGLQDSLKVVTDQQTAANTRLQNLKDAYTNQFNRLNVTLATMQS 657 LMD ILG++G LA+KTKGLQDSLK+VTDQQTAAN RLQ+LKD YTNQFNRLNVTLATMQS Sbjct: 601 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQS 660 Query: 658 RQSYLTEQLAKLAKSS 673 RQSYLT+QLAKL+KSS Sbjct: 661 RQSYLTQQLAKLSKSS 676 >gi|300311383|ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/690 (68%), Positives = 570/690 (82%), Gaps = 18/690 (2%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLQTKQSGFNTLISAYGSLKNALSSY 60 MATSTGTISTSAGPLDV+TLV+QLI+ ES+S+LTPL T+ S +NTLISAYGSLK+A+S+Y Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QTALKAMTAASFSAQKSTLTNAGTGSNLTTDPFTADANSDDSTKALAQKLQSRGYSSGTT 120 Q+A+KAMT+ASFSAQKS+++NAGTGSNLTTDPF+AD N DDSTK LAQK+QS G SSGTT Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 FSSGDTIAIKIGTNQPTFITLKADATMAGLRDTINASKAGVTASITTDANGDHLVLESNS 180 F++GD+IAIKIGTN P F+TL+A++T+AG+RD INA K G TASI TD GDHLVLESN+ Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 TGTANTIKVSANNSMSDMSYDP--SVAGSTTQIQAPRDATKAAAGQYSIGVSQLAQAVKV 238 GTANTIKV+ANNS+S YDP S + TQ QAPRDATKAA+G Y++ VSQLAQA K+ Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 239 SSAGIAPGSTFDNGVLAIKTGNGSTVLIQPKTNSLAGVRDAINASEAGVNASIVSDGTND 298 SSA IAPGSTFDNG+LAIKTG+GST +I+P TN+LAGVRDAIN+S+AGVNA+IVSDGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 299 HLVLTAKDTGAANNLRVSGTGNFSVFNFDPSGTVTSTGVDTSKTYSNGNLALQVGNKSFT 358 HLV+TAK++G+ N ++++GT NF+VFN DPSGTVTS V + +TYS GNL L+VG+ SF Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 359 ITPTDLDGSGAIGLNDVMKAINNANTGVTASISNDSSKDHLVLTPTG---TDAIQLTGNN 415 I P +GSG I L V AINNAN GVTASI+ND S DHLVLTPTG T A+ LTG + Sbjct: 361 IAPV-ANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTS 419 Query: 416 DYADLVGSSMGQLAKAQDAKLTIDGVAVTSTSNKVSNAISGVTLNLSKVTTAADNFTLAI 475 DYA L S MGQL KAQDAKL+IDGV VTS +NKV N ISGVTLNLSKVTT+ADNFTL I Sbjct: 420 DYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNI 479 Query: 476 TNDTSGVSTAANNFVSAYNTLAKAVAGLTKQTPSTTKGQASTGSPLAAESSVLSMMNQIR 535 +NDTSG++TAAN+FV+AYNTLAKAVAG+T QTPSTT GQA+T +PLA+ESSV ++M+Q+R Sbjct: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 Query: 536 STMLGAL-GDDGGTNLSQVGISFQKDGTLALDASKLTTAAGKDFEGVSKLFTGS------ 588 +T+ + G +G LS +GISFQKDGTLALD++KL+TAA +F G++ LF G+ Sbjct: 540 NTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTN 599 Query: 589 -----GGVVPKLQKLMDSILGDNGTLATKTKGLQDSLKVVTDQQTAANTRLQNLKDAYTN 643 G+V KLQ LM S+L DNG +ATKT GLQ SLK+ D+QTA +RL NLKDAYTN Sbjct: 600 TTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTN 659 Query: 644 QFNRLNVTLATMQSRQSYLTEQLAKLAKSS 673 QFN+LN+TL++MQS QSYLT+QLA LAKSS Sbjct: 660 QFNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >gi|300312832|ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/679 (56%), Positives = 508/679 (74%), Gaps = 8/679 (1%) Query: 1 MATSTGTISTSAGPLDVSTLVNQLIAVESKSKLTPLQTKQSGFNTLISAYGSLKNALSSY 60 MATSTG+ISTSAGPLDV+ LVNQL++VESKS+LTPL +K FN LISAYG L AL++Y Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QTALKAMTAASFSAQKSTLTNAGTGSNLTT--DPFTADANSDDSTKALAQKLQSRGYSSG 118 Q AL +TAA FSAQK+ ++N G S+ + D +AD NSD STKA AQ ++S G++SG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 TTFSSGDTIAIKIGTNQPTFITLKADATMAGLRDTINASKAGVTASITTDANGDHLVLES 178 F +GD++AIK+G P FITLKADAT+ GLRDTINA++AGVTAS+ D GDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 NSTGTANTIKVSANNSMSDMSYDP--SVAGSTTQIQAPRDATKAAAGQYSIGVSQLAQAV 236 N+ GTAN +KV ANNS+S +S+D S G+ TQ QA RDAT AA G Y+I V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 237 KVSSAGIAPGSTFDNGVLAIKTGNGSTVLIQPKTNSLAGVRDAINASEAGVNASIVSDGT 296 K+SSAGIAPGSTFD GVLAIK G+GST LI+P +N+LAGVRDAINA+ AGVNASIVSDG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 297 NDHLVLTAKDTGAANNLRVSGTGNFSVFNFDPSGTVTSTGVDTSKTYSNGNLALQVGNKS 356 +HLVLTAK++GA N LR+SGTG+F+VF+ DPSG ++ V K +S G + L VG ++ Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 357 FTITPTDLDGSGAIGLNDVMKAINNANTGVTASISN----DSSKDHLVLTPTGTDAIQLT 412 ++ P A GL DV +AIN A GV+A++ D + + LVL+ +G+D + L Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 Query: 413 GNNDYADLVGSSMGQLAKAQDAKLTIDGVAVTSTSNKVSNAISGVTLNLSKVTTAADNFT 472 G+ DYA L S+MGQL K QDA+L+IDGVA+T+TSN + +AISGVTLNL+K T+A D T Sbjct: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 Query: 473 LAITNDTSGVSTAANNFVSAYNTLAKAVAGLTKQTPSTTKGQASTGSPLAAESSVLSMMN 532 LAI+ND+SGV A N+FV+A+NTLAKA+A +T+Q P+ +GQA LA ES V ++ Sbjct: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRALTG 540 Query: 533 QIRSTMLGALGDDGGTNLSQVGISFQKDGTLALDASKLTTAAGKDFEGVSKLFTGSGGVV 592 ++R+ +L ++ + +L+ +G+ F+KDGTL LD+++L A ++FE V++LF G G+V Sbjct: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLV 600 Query: 593 PKLQKLMDSILGDNGTLATKTKGLQDSLKVVTDQQTAANTRLQNLKDAYTNQFNRLNVTL 652 + + L+D +LG+ G LA KT+GLQ SLK+V+DQQ AA RL NL+D+YTNQFNRLNVTL Sbjct: 601 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL 660 Query: 653 ATMQSRQSYLTEQLAKLAK 671 + MQ+ Q+YLT+QLA+L + Sbjct: 661 SKMQASQNYLTQQLARLRR 679 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.306 0.120 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,739,259 Number of extensions: 69028 Number of successful extensions: 328 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 288 Number of HSP's successfully gapped: 4 Length of query: 676 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 584 Effective length of database: 1,184,250 Effective search space: 691602000 Effective search space used: 691602000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 134 (56.2 bits)