BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0921.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase [H...   376   e-106
gi|300313332|ref|YP_003777424.1| stringent starvation transcript...    67   9e-13

>gi|300310452|ref|YP_003774544.1| maleylacetoacetate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  376 bits (965), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/215 (82%), Positives = 199/215 (92%)

Query: 1   MTTLYSYFRSSASYRVRIALNLKGVAYETAAVHLLNQGGEQLLPAFTQVNPHALVPVLAD 60
           MTTLYSYFRSSASYRVRIAL+LK + YET  VHLLNQGGEQLLPAFT++NPHALVPVLA+
Sbjct: 1   MTTLYSYFRSSASYRVRIALHLKDLPYETVPVHLLNQGGEQLLPAFTEINPHALVPVLAE 60

Query: 61  QGRLLTQSMAMLEYLEERYPTPALLPGDAFQRAHIRELALAIACEIHPLNNLRVLRYLKH 120
           +G  ++QS+AMLE LEER+PTP+LLPGDAFQRAHIR L+LAIAC+IHPLNNLRVL+YLK 
Sbjct: 61  EGHYVSQSLAMLELLEERHPTPSLLPGDAFQRAHIRALSLAIACDIHPLNNLRVLKYLKR 120

Query: 121 QLAVDEAQKTAWIQHWIKLGFSALEQQLAADTTRGHFCVGDAPTMADCFLVPQIFNARRF 180
           +L +D+ +K AWI HWI LGF+ALE+QLAADTTRGHFCVGDAPTMADC LVPQIFNARRF
Sbjct: 121 ELGMDDERKNAWIAHWINLGFTALERQLAADTTRGHFCVGDAPTMADCCLVPQIFNARRF 180

Query: 181 EVDMAPYPTLCAIDAACNALPAFQQAHPAQQPDAA 215
           EVDMAPYPTLCAI+ AC+ALPAFQQAHPAQQPDAA
Sbjct: 181 EVDMAPYPTLCAIEQACHALPAFQQAHPAQQPDAA 215


>gi|300313332|ref|YP_003777424.1| stringent starvation transcription
           regulator A protein [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 67.4 bits (163), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 22/189 (11%)

Query: 1   MTTLYSYFRSSASYRVRIALNLKGVAYETAAVHLLNQGGEQLLPAFTQVNPHALVPVLAD 60
           M  LYS      S R R+ L  KG+ +E   V L N+  +      + +NP+  VP+L +
Sbjct: 1   MMVLYSGTTCPFSQRCRLVLFEKGMDFEIRDVDLFNKPED-----ISVMNPYGQVPILVE 55

Query: 61  QGRLLTQSMAMLEYLEERYPTPALLPGDAFQRAHIRELALAIACE----IHPLNNLRVLR 116
           +  +L +S  + EY++ER+P P L+P D   RA  R +      E    +H L N     
Sbjct: 56  RDLVLYESNIINEYIDERFPHPQLMPADPLMRARARLMLFNFEKELFVHVHTLEN----- 110

Query: 117 YLKHQLAVDEAQKTAWIQHWIKLGFSALEQQLAADTTRGHFCVGDAPTMADCFLVPQIFN 176
             +   A +++Q+ A  +   +L       QLA    +  + +GD  +M D  L P ++ 
Sbjct: 111 --EKSKAAEKSQEKARNEIRDRLT------QLAPLFLKNKYMLGDEFSMLDVALAPLLWR 162

Query: 177 ARRFEVDMA 185
              + ++++
Sbjct: 163 LDHYGIELS 171


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 646,410
Number of extensions: 26624
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)