BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0920.p
         (448 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310451|ref|YP_003774543.1| 2-keto-4-pentenoate hydratase/2...   811   0.0  

>gi|300310451|ref|YP_003774543.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/445 (87%), Positives = 415/445 (93%)

Query: 1   MSLPSLKLNETHDTELRSWVESANAENCPFPLQNLPYGVFRRTGSEENFRAGVAIGNQIL 60
           MSL SL LNETHDTELRSWV SANA+ CPFP+QNLPYGVFRR GSEE+FR GVAIG+QIL
Sbjct: 1   MSLSSLTLNETHDTELRSWVPSANADGCPFPIQNLPYGVFRRAGSEEDFRVGVAIGDQIL 60

Query: 61  DLPAAQAAGAFSGYDEATRAAAHAACSGSTLNALMALDTAAWSALRLALSRLLRSGSPHQ 120
           DLPAAQ+AGAFSG+DEATR AAHAACSGS LNALMAL  A+WSALRLALS LLR+ SPHQ
Sbjct: 61  DLPAAQSAGAFSGFDEATRQAAHAACSGSRLNALMALTPASWSALRLALSHLLRTASPHQ 120

Query: 121 TELAACLVPQAQAEYDVPAAIGDYTDFYTSIHHATTVGKLFRPDNPLLPNYKWVPIGYHG 180
           TELAACLVPQAQAEYDVPAAIGDYTDFYTSIHHATTVGKLFRPDNPLLPNYKWVPIGYHG
Sbjct: 121 TELAACLVPQAQAEYDVPAAIGDYTDFYTSIHHATTVGKLFRPDNPLLPNYKWVPIGYHG 180

Query: 181 RASSIAISGQQFRRPVGQTKAPDADTPSFGPCKRLDYELEMGIFIGTGNALGEPVPMSQA 240
           R SSIA+SGQQFRRP+GQTKAPDAD P+FGPCKRLDYELE+GIFIG GNA+GEPVPM +A
Sbjct: 181 RVSSIAVSGQQFRRPLGQTKAPDADAPTFGPCKRLDYELEIGIFIGGGNAMGEPVPMEEA 240

Query: 241 EDKVFGLCLLNDWSARDVQAWEYQPLGPFLSKSFASTISPWIVTLEALAPYRCGWTRPAE 300
           EDKVFGLCLLNDWSARDVQAWEYQPLGPFLSKSFASTISPWIVTLEALAPYRC W+RP  
Sbjct: 241 EDKVFGLCLLNDWSARDVQAWEYQPLGPFLSKSFASTISPWIVTLEALAPYRCSWSRPDG 300

Query: 301 DPQPLPYLDAPTLRESGALDIELEVLIQTAAMREAGTAPQRLSLGNYRDAYWSVAQLVTH 360
           DPQPLPYLDAPTLR  GA D++LEVLIQTAAMR+AG  PQRLSL NYRDAYW+VAQLVTH
Sbjct: 301 DPQPLPYLDAPTLRTQGAFDVQLEVLIQTAAMRQAGQPPQRLSLSNYRDAYWTVAQLVTH 360

Query: 361 HTVNGCNLRPGDFLGTGTLSGPQPEEAGSLLELSTGGKVPLTLANGQQRVFLEDGDTIIL 420
           HTVNGCNLRPGDFLG+GTLSGP P+EAGSLLEL+TGGK PLTLA+G++RVFLEDGDTIIL
Sbjct: 361 HTVNGCNLRPGDFLGSGTLSGPAPDEAGSLLELTTGGKSPLTLASGEKRVFLEDGDTIIL 420

Query: 421 RAAARRAGRPIIGFGEAAGTVLPAR 445
           RA ARR G P+IGFGE+AGTVLPAR
Sbjct: 421 RAVARRDGLPLIGFGESAGTVLPAR 445


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,490,384
Number of extensions: 65315
Number of successful extensions: 178
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,203,190
Effective search space: 433148400
Effective search space used: 433148400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)