BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0919.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310450|ref|YP_003774542.1| homogentisate 1,2-dioxygenase [...   852   0.0  

>gi|300310450|ref|YP_003774542.1| homogentisate 1,2-dioxygenase
           [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/443 (94%), Positives = 429/443 (96%)

Query: 1   MNTVTDSAVSHHVHTRGYQSGFGNEFATEALPGALPAHQNSPQQVAYGLYAEQISGTAFT 60
           MNT TD +VSHHVHTRGYQSGFGNEFATEALP ALPAHQNSPQ+VAYGLYAEQISGTAFT
Sbjct: 1   MNTATDFSVSHHVHTRGYQSGFGNEFATEALPSALPAHQNSPQRVAYGLYAEQISGTAFT 60

Query: 61  APRGHNRRSWLYRIRPAAVHHPFEAMPRGLLVSHFDDVAAPPNQLRWDPQPMPTVPTDFI 120
           APRGHNRRSWLYRIRPAA+HHPFEAM +GLLVS FDDVA PPNQLRWDP PMPT PTDFI
Sbjct: 61  APRGHNRRSWLYRIRPAAMHHPFEAMSQGLLVSRFDDVAPPPNQLRWDPLPMPTTPTDFI 120

Query: 121 EGLVTVAGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGEWLIVPQLGRLQLRTEMGVLD 180
           +GLVT+AGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGE LIVPQ+GRLQLRTEMGV+D
Sbjct: 121 DGLVTMAGNGSPQAQSGCAIHLYAANCSMTDRFFYSADGELLIVPQMGRLQLRTEMGVID 180

Query: 181 IEPQEIAVIPRGVRFQVRLPDGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA 240
           IEPQEIAVIPRGVRFQVRLP GEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA
Sbjct: 181 IEPQEIAVIPRGVRFQVRLPGGEARGYICENFGALLRLPDLGPLGSNGLANPRDFATPHA 240

Query: 241 WYEDREGDFQLIAKFGGNLWQARIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHPD 300
           WYEDREGDFQLIAKFGG LWQARIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHPD
Sbjct: 241 WYEDREGDFQLIAKFGGQLWQARIGHSPLDVVAWHGNYAPYKYDLRHFNTIGSISYDHPD 300

Query: 301 PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAEHTFRPPWFHRNVASEYMGLITGQYDAKE 360
           PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAE+TFRPPWFHRNVASEYMGLITGQYDAKE
Sbjct: 301 PSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEYMGLITGQYDAKE 360

Query: 361 GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTTQPNKVDHTMAFMFETRNILCPTRHAL 420
           GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDT+ PNKVDHTMAFMFETRNILCPTRHAL
Sbjct: 361 GGGFVPGGGSLHNCMSGHGPDAATFEKASRIDTSTPNKVDHTMAFMFETRNILCPTRHAL 420

Query: 421 DTPTLQRDYQDCWLGIQKNFNPE 443
            +P LQRDYQDCWLGIQKNFNPE
Sbjct: 421 ASPALQRDYQDCWLGIQKNFNPE 443


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,668,955
Number of extensions: 78540
Number of successful extensions: 151
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)