BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0917.p (304 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310448|ref|YP_003774540.1| transcription regulator protein... 578 e-166 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 219 3e-58 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 216 2e-57 gi|300310812|ref|YP_003774904.1| LysR family transcription regul... 173 2e-44 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 139 4e-34 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 578 bits (1489), Expect = e-166, Method: Compositional matrix adjust. Identities = 288/306 (94%), Positives = 292/306 (95%), Gaps = 2/306 (0%) Query: 1 MALIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTA 60 M LIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSF DELFVRTA Sbjct: 1 MPLIEPRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTA 60 Query: 61 QGMQPTPFAEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIE 120 QGMQPTPFAE LAEPVAAALQQVARALNLQEGFAPQ S RRFTIAMTDVGEVYFMP LIE Sbjct: 61 QGMQPTPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIE 120 Query: 121 ACACVAPGVRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRL 180 ACA APGV +STVRAG IDLKSEME+GRVDLAIGAFDNLSEALYQRRLFRQEYVSMFR+ Sbjct: 121 ACARCAPGVSISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRI 180 Query: 181 GHALDK--RGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY 238 GHALDK RGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY Sbjct: 181 GHALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPY 240 Query: 239 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNLI 298 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLP+LQTNMFWHRRYNQDEGNVWLR I Sbjct: 241 IVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFI 300 Query: 299 SEHFAE 304 SEHFAE Sbjct: 301 SEHFAE 306 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 115/293 (39%), Positives = 165/293 (56%), Gaps = 2/293 (0%) Query: 8 DIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTP 67 ++DLNLL VFQ + ER ++ RL LSQPAVS AL RLR+ F D LF+RT +GMQPTP Sbjct: 6 NMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPTP 65 Query: 68 FAEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAP 127 A LA+P+ ALQ V AL E F P S R F +MTDV E+ F+P L E AP Sbjct: 66 AALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQAP 125 Query: 128 GVRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRLGHALDKR 187 VRL + L+ + G++D A G L LFR+ YV + R L +R Sbjct: 126 DVRLQVEQVPPAHLEEALRTGQLDFAFGNLPALKPVTCHELLFRETYVCLMRQRDGLPQR 185 Query: 188 GEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTALVV 247 ++ L EFLA H++V S ES + ++ + +K G+ + +PHFT +P I+ + LV Sbjct: 186 AQLELDEFLAMSHVLVESAESSHHQVENSFQKLGVQRRISLSIPHFTVLPRILGKSDLVA 245 Query: 248 TVPRKLAE--SAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNLI 298 TVP ++A + P + P+ +P ++ + WH+ ++ D GN WLR ++ Sbjct: 246 TVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLRQIV 298 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 216 bits (549), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 116/296 (39%), Positives = 175/296 (59%), Gaps = 2/296 (0%) Query: 8 DIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTP 67 + DLNLL + VF+ER +S+ AR+L +SQPAVS AL +LR + GD LFV+T +GMQPTP Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 68 FAEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAP 127 A L P LQ+V + + F P + +RF +A++D+GE+ +PRL+E AP Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 128 GVRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNL-SEALYQRRLFRQEYVSMFRLGHALDK 186 + TV +L + +E+G VDLAIG F +L + +Q+RLF Q++V + R GH L Sbjct: 123 HASVVTVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPLPA 182 Query: 187 RGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTALV 246 + ++SL+ + AA H++V ++ + L + I V HF A+P +V+++ LV Sbjct: 183 Q-KISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLVATSDLV 241 Query: 247 VTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISEHF 302 TVPR E G+R ++P +P L WHR+Y++D GN WLR L + F Sbjct: 242 ATVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGLAAALF 297 >gi|300310812|ref|YP_003774904.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 173 bits (438), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 152/294 (51%), Gaps = 1/294 (0%) Query: 10 DLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPFA 69 DLNLL F +++ R +++ A RL L+QPAVS+AL RLR F D LFVR+ M PT A Sbjct: 10 DLNLLKTFIVIWELRSLTAAAERLHLTQPAVSHALRRLREMFDDPLFVRSTSAMVPTETA 69 Query: 70 EHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPGV 129 L EP+A AL + AL+ F P + R F + M+D+ + +P L+E A AP V Sbjct: 70 IRLHEPIARALDILQEALHTHAQFDPATATRTFHLVMSDMSCSHVLPLLMEELAHAAPHV 129 Query: 130 RLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRLGHALDKRGE 189 + + +L + M G VDLA G L E + + +Y+ M R H L +G Sbjct: 130 SIEVQQMAMENLGAAMRNGDVDLAFGYLPGLPEDCQSQLVLYDDYICMLRREHPL-AQGP 188 Query: 190 VSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYIVSSTALVVTV 249 ++L+ L ++ + + + L AG+ V R+PHFT P IV T L + + Sbjct: 189 LTLENLLQLRYVYTVTNTTGHQLAEDVLRNAGVKRDVALRMPHFTVAPQIVRITDLALFL 248 Query: 250 PRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNLISEHFA 303 PR +AE + PL +P + +++ H R++ D G WLR+L+ E F Sbjct: 249 PRSIAERNNLDHAFVLLDLPLEMPRIPVSIYTHTRFSGDTGIQWLRSLLIEMFG 302 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 139 bits (349), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/302 (30%), Positives = 146/302 (48%), Gaps = 13/302 (4%) Query: 9 IDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFGDELFVRTAQGMQPTPF 68 +DLNLL VF V E+ ++ A L ++QPAVSNAL RLR + D+L +RTA G++PTP Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 Query: 69 AEHLAEPVAAALQQVARALNLQEGFAPQDSERRFTIAMTDVGEVYFMPRLIEACACVAPG 128 AE L V AL ++ A+ E F ++ F +AM D ++P L+ AP Sbjct: 66 AEELWPTVRRALSEL-EAVIAPESFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 129 VRLSTVRAGNIDLKSEMEAGRVDLAIGAFDNLSEAL-----------YQRRLFRQEYVSM 177 +++ + D ++ + G +DLA+G F ++ L RL+ +YV + Sbjct: 125 IKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCV 184 Query: 178 FRLGHALDKRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVP 237 H L + ++L + A+HL+VS P+ I+ L + V F Sbjct: 185 MHKSHPLAGQ-PLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFFTAG 243 Query: 238 YIVSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPALQTNMFWHRRYNQDEGNVWLRNL 297 IV+S+ L+ +PR L + L + P + P +M WH R ++ + WLR Sbjct: 244 RIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAHKWLRAH 303 Query: 298 IS 299 +S Sbjct: 304 LS 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 855,675 Number of extensions: 31660 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 18 Length of query: 304 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 219 Effective length of database: 1,217,395 Effective search space: 266609505 Effective search space used: 266609505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)