BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0916.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum serope...   441   e-125
gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedi...   146   2e-36
gi|300311008|ref|YP_003775100.1| esterase/lipase/thioesterase fa...    80   2e-16

>gi|300310447|ref|YP_003774539.1| esterase [Herbaspirillum
           seropedicae SmR1]
          Length = 277

 Score =  441 bits (1135), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/275 (76%), Positives = 238/275 (86%)

Query: 1   MNIYRDYDRQALDRQYNVRLGISDFQAYFDRFASEGQAARQAHPHLADVPYGEDALQTLD 60
           M IYRDY  + LD QYNVR  + DFQ YFDRFA +G+AARQAHPHLAD+PYGE+ LQ++D
Sbjct: 1   MKIYRDYTSEELDAQYNVRARVPDFQDYFDRFARQGEAARQAHPHLADLPYGEETLQSID 60

Query: 61  FFPGRSNGRPLLVFIHGGYWRSLDKHQFSQVALPYLAQDINVALINYRLAPQVRMGDIAA 120
           FFP  SNGRPLLVFIHGGYWRSLDKHQFS +ALPYL QDINVALINYRLAPQVRMGDIAA
Sbjct: 61  FFPAHSNGRPLLVFIHGGYWRSLDKHQFSHLALPYLEQDINVALINYRLAPQVRMGDIAA 120

Query: 121 DCGRALRLLYAKAAALRFDPDAIWLMGHSAGAHLAALIASLGAAPVRGLCGISGIYDLEP 180
           DCGRALRLL+AKA ALR D +AIWLMGHSAGAHLA +IA+L AAPVRG+C +SG+YDLEP
Sbjct: 121 DCGRALRLLHAKAPALRVDANAIWLMGHSAGAHLACVIAALRAAPVRGVCALSGLYDLEP 180

Query: 181 VRLSYLNEVLHLSPSDALQASPQLLALPNGVQALLCAGGQESAEFQRQRDLYAATLRQSG 240
           +RLSYLNE LHLSP+D  QASP LLA+P+GV+A+LCAGGQES EF RQRD+YAA LRQSG
Sbjct: 181 IRLSYLNEALHLSPADVQQASPLLLAMPDGVRAVLCAGGQESEEFLRQRDVYAANLRQSG 240

Query: 241 HAVEVVSLPQAHHLDVVDVAADAHSVLTRTMVKMM 275
           H VEVV   QAHHL ++DVAAD  S  TRT+++MM
Sbjct: 241 HQVEVVEAAQAHHLSIIDVAADGQSAFTRTVLRMM 275


>gi|300312950|ref|YP_003777042.1| lipase [Herbaspirillum seropedicae
           SmR1]
          Length = 289

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/262 (36%), Positives = 131/262 (50%), Gaps = 6/262 (2%)

Query: 16  YNVRLGISDFQAYFDRFASEGQAARQAHPHLADVPYGEDALQTLDFFPGRSNGRPLLVFI 75
           YN++    DF     ++     A        +D+ YG+  LQ  DF+      RPLLVFI
Sbjct: 26  YNLKAAFPDFPQVLQQWQQATAAIADTLLTESDISYGDAPLQRFDFYRAEGAQRPLLVFI 85

Query: 76  HGGYWRSLDKHQFSQVALPYLAQDINVALINYRLAPQVRMGDIAADCGRALRLLYAKAAA 135
           HGGYW+  DK     +A PY+   I+VA+INY LAPQ R+ D+  +    L  +  +A  
Sbjct: 86  HGGYWQGGDKRDIGFIAAPYVKAGISVAVINYSLAPQARIEDMVKEVQACLSTIAQQAER 145

Query: 136 LRFDPDAIWLMGHSAGAHLAALIASL-GAAPVRGLCGISGIYDLEPVRLSYLNEVLHLSP 194
           L  D D I LMGHSAG HLAA +A+  G  PV+ +  ISG++DL P+  + LN+ L L  
Sbjct: 146 LGIDVDRISLMGHSAGGHLAAFVAAQPGRMPVQAVFAISGVFDLAPLIPTSLNKALTLDQ 205

Query: 195 SDALQASPQLLALPNGVQALLCAGGQESAEFQRQRDLYAATLRQ-SGHAVEVVSLPQAHH 253
             A   SP L   P   +     G  E+ +F  Q  + A    Q   H V    +P  HH
Sbjct: 206 VRADALSPVLQTGPAQTRVHTIIGELETLQFHLQAAVMANCWPQVVAHHV----VPDTHH 261

Query: 254 LDVVDVAADAHSVLTRTMVKMM 275
             V+   ADA S + R ++  M
Sbjct: 262 YTVLFPLADADSSVCRAVIAEM 283


>gi|300311008|ref|YP_003775100.1| esterase/lipase/thioesterase
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 19/210 (9%)

Query: 53  EDALQTLDFF-PGRS-----NGRPLLVFIHGGYWRSLDKHQFSQVALPYLAQDINVALIN 106
           ++A Q LD + P  +      GRP++VF +GG W    +  ++ V     ++ +   L +
Sbjct: 51  DNARQQLDIYRPADTASAPPQGRPVVVFFYGGSWNQGSRKDYAFVGEALASRGVIAVLPD 110

Query: 107 YRLAPQVRMGDIAADCGRALRLLYAKAAALRFDPDAIWLMGHSAGAHLAALIA------- 159
           YRL P+V   D   D  +A+        AL  DP  +++MGHSAGA+ AA++A       
Sbjct: 111 YRLYPEVSYPDFLQDSAQAVAWTLRSLQALGGDPQRVFVMGHSAGAYNAAMMALDARWLD 170

Query: 160 SLGAAP--VRGLCGISGIYDLEPVRLSYLNEVLHLSPSDALQASPQLLALPNGVQALLCA 217
           + GA P  +RG  G++G YD  P+    +  V H  P     + P      +   ALL A
Sbjct: 171 AAGATPAQLRGWIGLAGPYDFLPIENPDVKPVFHF-PDSPPDSQPVRHVQASAPPALLIA 229

Query: 218 GGQES-AEFQRQRDLYAATLRQSGHAVEVV 246
             Q+      R     AA LRQ  H V VV
Sbjct: 230 SHQDKLVSATRNTGGLAALLRQ--HGVPVV 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 764,517
Number of extensions: 29306
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)