BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0915.p (851 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein... 1305 0.0 gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein... 75 3e-14 >gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein component [Herbaspirillum seropedicae SmR1] Length = 850 Score = 1305 bits (3378), Expect = 0.0, Method: Compositional matrix adjust. Identities = 660/855 (77%), Positives = 737/855 (86%), Gaps = 9/855 (1%) Query: 1 MFKKIWFQLHWFIGITAGTLLMTIGVTGAMLAFREEILEAMNPGVMHVQLRQQATLTPQQ 60 MFKKIWFQLHWFIGITAGT+LMTIGVTGA+LAFREEI++ ++PGVMHVQ+RQQATLTPQQ Sbjct: 1 MFKKIWFQLHWFIGITAGTVLMTIGVTGALLAFREEIMDLLSPGVMHVQVRQQATLTPQQ 60 Query: 61 ILDRLHQARPEQRVTNMLLSSESGASVRVIFAPPPGVHRGEIRYVDPYTGALLPPLKGAA 120 +L++L Q P++R+T M LS+E G SVRV+FAPPPG RG+ RYVDPYTGALLPP+ G Sbjct: 61 VLEKLRQEEPQRRITTMTLSAEPGDSVRVVFAPPPGERRGQARYVDPYTGALLPPVTGME 120 Query: 121 FFEFTERFHRWLLLPTEIGKIVLGTLALSLLMLTLSGLYLRWPRRPWSLRAWLRLDWQLQ 180 FFEFTERFHRWLLLPTEIGKIVLGTLAL LLML LSGLYLRWPRR SLRAWLRLD+QLQ Sbjct: 121 FFEFTERFHRWLLLPTEIGKIVLGTLALCLLMLALSGLYLRWPRRALSLRAWLRLDFQLQ 180 Query: 181 GRSFLWNLHSVIGTWLLVIYVLLATTGAYWALDWFKDGLNTLAGESRRAPMQRDAGKKKE 240 GRS LWNLHSVIGTW LV+YV+ ATTGAYWALDWFKDG+NTLAGE+RRAPM R GKKK+ Sbjct: 181 GRSLLWNLHSVIGTWSLVMYVIFATTGAYWALDWFKDGVNTLAGETRRAPMARGEGKKKD 240 Query: 241 AAHAAVP--LELTKAWNSFLALAPDYQNAQLRLPEQGSQPLQIFFLGHDAPHERARNRMV 298 + P L+LT+AWN+FL APDYQ+AQLRLPEQG+QPLQIFFLGHDAPHERAR+RMV Sbjct: 241 GPNNQTPVALDLTQAWNAFLTKAPDYQSAQLRLPEQGTQPLQIFFLGHDAPHERARSRMV 300 Query: 299 VLPQTGEVKQLERYEDKSRGGKLLTAIYPLHMGTYFGLPGRIIMAIASLMMPLFGITGWM 358 VLPQ+GE+KQLERYEDKS GG+ + AIYPLHMGTYFGLPGRIIMAIASLMMPLFGITGWM Sbjct: 301 VLPQSGEIKQLERYEDKSTGGRFIAAIYPLHMGTYFGLPGRIIMAIASLMMPLFGITGWM 360 Query: 359 LYLDRRRKKAALRAERESLGEAPRNAADSTQGDPVLVVHASQTGQAERIALHTAAGLRRS 418 LYLDRRRKKAALRAER +LGE + A G +LV +ASQTGQAERIALHTAA LRRS Sbjct: 361 LYLDRRRKKAALRAERAALGEPQQQA-----GGQLLVAYASQTGQAERIALHTAARLRRS 415 Query: 419 GLSVSLQALAQTTLESLRHHRRILFIASTFGDGDAPDSARGFEKRLRQAAGQSLSHVQYA 478 G++V+LQALAQTT E+LRHH R+L IASTFG+GDAPDSARGFE+RLRQAAGQSL+H+ YA Sbjct: 416 GVAVTLQALAQTTAETLRHHPRLLLIASTFGEGDAPDSARGFERRLRQAAGQSLAHLHYA 475 Query: 479 ILALGDRHYTQFCGFGHTLDHGLRQCGATPLFPLVEVDRMAASALRKWDSELAAHGLQAG 538 +LALGDRHYT FCGFGHTLDHGLRQCGA P+FPLVEVDRM A+ALRKW+SELA+HGL A Sbjct: 476 VLALGDRHYTSFCGFGHTLDHGLRQCGAKPMFPLVEVDRMDAAALRKWESELASHGLDAA 535 Query: 539 VAELLPTSAPTWQSWTLRRRVLMNPGSQGEPLYHLELQP--QSGPLPAWQAGALVQVQPR 596 V++LLPTS+PTW SW L R +N GSQGEPL+HL LQ S P PAWQAGAL++V PR Sbjct: 536 VSDLLPTSSPTWPSWVLVERHHLNAGSQGEPLFHLVLQSADSSQPAPAWQAGALLEVMPR 595 Query: 597 HAPDRIALLLQRLQLDGATRVRHQGAECTLAEALAGSILPPHPANDAQALADQLQPLAAR 656 HAPDR+AL+LQRL LDGAT V +G C+LA+ALA S+LP A DAQ LA QLQPL AR Sbjct: 596 HAPDRVALVLQRLGLDGATEVHCRGMRCSLADALACSVLPMQAAADAQTLAQQLQPLTAR 655 Query: 657 SYSVASVPQDGALHLLVRQVQHEDGLGLASGWLTEYAPLEGALPLRLLDNAGFAPLDTDA 716 SYSVAS QDG + LLVRQ +HEDGLGLASGWLTEYAPL L RL+DNAGFAP+ D Sbjct: 656 SYSVASAMQDGTVQLLVRQQRHEDGLGLASGWLTEYAPLGARLQARLVDNAGFAPVSADT 715 Query: 717 PAIFIGNGSGLAGLRSHLRARVQAGQKRNWLLFGERNERYDFLYREELLQWLEQGQLARL 776 PAIFIGNGSG+AGLR HLR R+ AG RNWLLFGERNERYDFLYREEL WL+QGQLARL Sbjct: 716 PAIFIGNGSGMAGLRGHLRQRIHAGGTRNWLLFGERNERYDFLYREELQAWLQQGQLARL 775 Query: 777 DLAFSRDQAERLYVQDRLREAAPELRQWIAQGAVLYVCGSLEGMAAGVDAVLNATLGEQT 836 DLAFSRDQ R+YVQDRLREAA ELR W+ QGAVLYVCGSL+GMAAGVDAVL + LGE Sbjct: 776 DLAFSRDQEARIYVQDRLREAAGELRHWLDQGAVLYVCGSLDGMAAGVDAVLTSLLGETG 835 Query: 837 VHALIEQNRYRRDVY 851 + LIEQNRYRRDVY Sbjct: 836 LQDLIEQNRYRRDVY 850 >gi|300311804|ref|YP_003775896.1| iron-regulated membrane protein [Herbaspirillum seropedicae SmR1] Length = 416 Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 99/411 (24%), Positives = 169/411 (41%), Gaps = 50/411 (12%) Query: 9 LHWFIGITAGTLLMTIGVTGAMLAFREEILEAMNPGVMHVQLRQQ----ATLTPQQILDR 64 LH + G+ A L G+TGA++++ E+ +NP + + Q A + ++ R Sbjct: 8 LHRWFGLAAAVFLFIAGLTGAVISWDHELDAWLNPQLFDARSATQPGAGAPMPGLELARR 67 Query: 65 LHQARPEQRVTNMLLSSESGASVRVIFAPPPGVHRGEIRY-------VDPYT-------- 109 + QA P RVT +L +E G ++ ++ P G++ VDP+T Sbjct: 68 VEQAEPRLRVTYVLTQAEPGHTIGMMVEPRVDPATGKLYTLDYNQIAVDPFTAEIQGRRM 127 Query: 110 -GALLPPLKGAAFFEFTERFHRWLLLPT----EIGKIVLGTLALSLLMLTLSGLYLRWPR 164 GA+ L F + H + LP E G +++G + + + L LYL +P Sbjct: 128 WGAI--SLSRENLLPFLYKLHYTMHLPDLGGLETGILLMGIIGIVWALDCLIALYLSFPN 185 Query: 165 -RPWSLRAWLRLDWQLQGRSFLWNLHSVIGTWLLVIYVLLATTGAYWALD--WFKDGLNT 221 R W R L W+ G ++LH G W+ + ++LA T L+ + L T Sbjct: 186 WRSW--RKSLAFRWRDGGHKLNFDLHRSGGVWVWGLLLILAVTSVSMNLERQVMRPLLQT 243 Query: 222 LAGESRRAPMQRDAGKKKEAAHAAVPLELTKAWNSFLALAPDYQNAQLRLPEQ------- 274 L S P D A P +T+ L A Q ++ L E Sbjct: 244 L---STLTPSPFDTRTPTAPEKVAEP-RITREQAVALGQA---QARKMGLTEPVGGVFYS 296 Query: 275 ---GSQPLQIFFLGHDAPHERARNRMVVLPQTGEVKQLERYEDKSRGGKL-LTAIYPLHM 330 G + F G+D N + + + + G + L A +PLH Sbjct: 297 GMFGVYGVGYFQPGNDHGDIGLGNAWLYFDANSGAYEGGKIPGRGSAGDIFLQAQFPLHS 356 Query: 331 GTYFGLPGRIIMAIASLMMPLFGITGWMLYLDRRRKKAALRAERESLGEAP 381 G GLPGRI+++ ++ + +TG ++++ R+RK + ER + + P Sbjct: 357 GRILGLPGRILISFMGALVAMLSVTGVIIWV-RKRKARLQQRERTAAQKTP 406 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,774,606 Number of extensions: 120502 Number of successful extensions: 432 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 427 Number of HSP's successfully gapped: 2 Length of query: 851 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 758 Effective length of database: 1,179,515 Effective search space: 894072370 Effective search space used: 894072370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)