BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0914.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   831   0.0  
gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   133   4e-32

>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/464 (90%), Positives = 440/464 (94%)

Query: 15  RRYGPAWLLLVLLSLTLAACSSLPTIVPDMDRQSARTIQMKGGRGVLSAAQSKAVLDKLR 74
           RR+    L+L  LS  L++CSSLPTIVPDMD QSARTIQMKGGRGVLS AQSKAVL+KLR
Sbjct: 9   RRWCATLLVLAGLSALLSSCSSLPTIVPDMDTQSARTIQMKGGRGVLSEAQSKAVLEKLR 68

Query: 75  AQNADNTILDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARYHINMETYI 134
           AQNADNT+LDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARYHINMETYI
Sbjct: 69  AQNADNTLLDRHVAIEGAITGSPLVTGNKVTLLIDGPATYASMQQAIQAARYHINMETYI 128

Query: 135 MEDDEVGRQFADLLIAMQNKGVQVNLMYDSVGALNTPRAFFQSMIDAGIHVLEYNPLNPT 194
           MEDDEVGRQFADLLIAMQNKGVQVNLMYDSVGALNTPR FFQ MIDAGI VLEYNPLNPT
Sbjct: 129 MEDDEVGRQFADLLIAMQNKGVQVNLMYDSVGALNTPRTFFQPMIDAGIQVLEYNPLNPT 188

Query: 195 QLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSSRQKKPRVNQQGQQIPWRD 254
           QLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFS+R+KKPRVN +G+QIPWRD
Sbjct: 189 QLRKDWEVNQRDHRKLLVVDGKTAFVGGINISSVYSSGSFSTRKKKPRVNAEGEQIPWRD 248

Query: 255 TQVRIDGPVALEFQKLFINTWQQQRGPDLGEHRYFPQVAVAGNEIVRAIGSSPDDPYSVI 314
           TQVRIDGPVALEFQKLF++TW +QRGP LG+HRYFP VA AGNEIVRAIGSSPDDPYSVI
Sbjct: 249 TQVRIDGPVALEFQKLFVDTWNKQRGPALGDHRYFPTVAPAGNEIVRAIGSSPDDPYSVI 308

Query: 315 YATFISAIQHAESTIYLTNAYFVPDPQLRDALKAAARRGVDVRLILPSHSDSSLVLYASR 374
           YATFISAIQHAE  IYLTNAYFVPDPQLRD+LK AARRGVDVRLILPSHSDSSLVLYASR
Sbjct: 309 YATFISAIQHAEKAIYLTNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLYASR 368

Query: 375 SFYAELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPAF 434
           SFY ELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSP F
Sbjct: 369 SFYQELLEAGIRIYERQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQF 428

Query: 435 GVQMKSMFERDLGASREITREQWGQRPISERMKEFGASLWARLL 478
           GVQMKSMF+RDLGAS+EIT+EQW QRPISERMKEFGAS+WARLL
Sbjct: 429 GVQMKSMFDRDLGASKEITKEQWEQRPISERMKEFGASVWARLL 472


>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 169/383 (44%), Gaps = 30/383 (7%)

Query: 101 GNKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQNKGVQVNL 160
           GN++ LL  G   Y ++  AI AAR  I +ETYI   D+ G    + L     +GV V +
Sbjct: 9   GNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAAGRGVVVYV 68

Query: 161 MYD--SVGALNTPRAFFQSMIDAGIHVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTA 218
           + D    G  NT +    ++  AG+    +NP      R+      R HRKL VVD + A
Sbjct: 69  INDWLGTGRENTNKLHL-ALSAAGVQHRSFNPW----FRRG---VARSHRKLCVVDRQVA 120

Query: 219 FVGGINISS-VYSSGSFSSRQKKPRVNQQGQQIPWRDTQVRIDGPVALEFQKLFINTWQ- 276
           FVGG+NI+  + S     +    PR         W D  V I GP+  E  +     W  
Sbjct: 121 FVGGLNINDDMVSDRDHMTPLPAPR---------W-DFAVSILGPLVQEIYREVQAQWLR 170

Query: 277 ------QQRGPDLGEHRYFPQVAVAGNEIVRAIGSSPDDPYSVIYATFISAIQHAESTIY 330
                 + R  +    R+     V        +          I   ++ A+  A  + +
Sbjct: 171 VGHMKLKARWRNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAF 230

Query: 331 LTNAYFVPDPQLRDALKAAARRGVDVRLILPSHSDSSLVLYASRSFYAELLEAGIRIYER 390
           L N YF P  ++R AL+ AA RGV V L+L       +    + SFY +LL AG+RI E 
Sbjct: 231 LANPYFAPGRKMRRALEEAAMRGVKVTLLLGV-GQFMMQDAVAHSFYPKLLRAGVRIIEY 289

Query: 391 QDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPAFGVQMKSMFERDLGASR 450
               LH+K A++D  W+T+GS+N D  S   NQE N V+  PAF   ++   E      R
Sbjct: 290 TRTELHAKVAVVDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGR 349

Query: 451 EITREQWGQRPISERMKEFGASL 473
            +    +   P  +R   +GA+ 
Sbjct: 350 VVHLADFMHVPWYKR-AAYGAAF 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,399,103
Number of extensions: 54822
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 3
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)