BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0913.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310444|ref|YP_003774536.1| signal peptide protein [Herbasp...   464   e-132

>gi|300310444|ref|YP_003774536.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  464 bits (1195), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 231/306 (75%), Positives = 257/306 (83%), Gaps = 4/306 (1%)

Query: 3   SKLSRFLSRFLSRCIGPVALALLLSGWSHAQTLN----GANAMKTRYTELQGELHHNVYQ 58
           S+L   LSR     +   ALAL+L G + AQ  N    G  AMK+RY ELQGEL +N YQ
Sbjct: 6   SRLRSTLSRLSRPLMACAALALVLCGAAQAQAQNQTQAGMAAMKSRYEELQGELSNNAYQ 65

Query: 59  RALYLNSRDDNGTAKGDIFAVMNYPFAQVRQALDSPDHWCDILILHLNTKYCRLAREGGK 118
           R LYLNSR+ + T KGDI+AV+ YPFAQVR+ALD P+HWCDILILHLNTKYCRL REGGK
Sbjct: 66  RPLYLNSREQDSTVKGDIYAVLAYPFAQVREALDGPEHWCDILILHLNTKYCRLLREGGK 125

Query: 119 TTLHMQVGKKTEQQLKDTYQVDLRYQGGSSAADYFSSSMLADKGPLDTSDYHIEIEAIPV 178
           TTL MQVGKKTEQ L DTY+VDLRY GGSSAA+YFSSSMLADKGPLDTS+Y IEIEAIP+
Sbjct: 126 TTLRMQVGKKTEQDLNDTYRVDLRYHGGSSAAEYFSSSMLADKGPLDTSNYRIEIEAIPL 185

Query: 179 DENRSFLHFSYAYSYGMASKLALRAYLMTVGRDKVGFSIVKRDANGQPHYVSGSRATVER 238
           DE RSFLHFSYAYSYGMAS+LALRAYLMTVGRDKVGFS+VKRDANGQ  YVSGSRATVER
Sbjct: 186 DERRSFLHFSYAYSYGMASRLALRAYLMTVGRDKVGFSVVKRDANGQAQYVSGSRATVER 245

Query: 239 NTMRYYLAIDSYLWAQQAAPSEQLEKRLAHWYDATEQYSRQLHEVSRDDYLSMKRKEVAR 298
           NTMRYYLAID+YL A +A   E+LEKRLA WY ATEQY RQLHE++R++YLSMKRKEVAR
Sbjct: 246 NTMRYYLAIDAYLAALEAPAGERLEKRLAAWYGATEQYPRQLHELTREEYLSMKRKEVAR 305

Query: 299 QQKAGN 304
           QQK G+
Sbjct: 306 QQKPGS 311


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,438
Number of extensions: 34874
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)