BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0906.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate aldol...   402   e-113
gi|300310363|ref|YP_003774455.1| 2-dehydro-3-deoxy-6-phosphogala...    69   3e-13

>gi|300310434|ref|YP_003774526.1| 2-keto-4-hydroxyglutarate
           aldolase/-keto-3-deoxy-6-phosphogluconate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 209

 Score =  402 bits (1033), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 207/208 (99%)

Query: 1   MKTTLEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEVTLRTEHGLPAIRAIAEQV 60
           MKTTLEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLE+TLRTEHGLPAIRAIAE V
Sbjct: 1   MKTTLEIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEITLRTEHGLPAIRAIAESV 60

Query: 61  PEAIVGVGTLTAPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAA 120
           P+AIVGVGTLT+PEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAA
Sbjct: 61  PDAIVGVGTLTSPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAA 120

Query: 121 REAGFRQLKLFPAVPAGGIGMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGS 180
           REAGFRQLKLFPAVPAGG+GMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGS
Sbjct: 121 REAGFRQLKLFPAVPAGGVGMLNGIAGPLADVSFCPTGGITQETAPQFLACKNVVCVGGS 180

Query: 181 WLTPKAAIEAGDWDKITEIAKAAAALKK 208
           WLTPKAAIEAGDWDKITEIAKAA+ALKK
Sbjct: 181 WLTPKAAIEAGDWDKITEIAKAASALKK 208


>gi|300310363|ref|YP_003774455.1|
           2-dehydro-3-deoxy-6-phosphogalactonate aldolase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 1/167 (0%)

Query: 6   EIMRASPVIPVIAIDKFEHAVPLARALVAGGIRVLEVTLRTEHGLPAIRAIAEQVP-EAI 64
           + +R++ +I ++   +   A  +  AL   G R++EV L +   L +I A+ + +P + I
Sbjct: 10  DALRSTGMIAILRGVRNAEAEAIGAALYESGFRIIEVPLNSPEPLLSITALRKSLPADCI 69

Query: 65  VGVGTLTAPEEFTASRDAGAVFGVSPGLTPALIEAAKRSGLPLLPGVMTPSEVMAAREAG 124
           VG GT+  P +    +DAG    V P    A+I AA+ +GL   PGV T +E  AA + G
Sbjct: 70  VGAGTVLKPAQVEQVKDAGGELIVMPHSDGAVIRAARDAGLYSAPGVATVTEAFAALDNG 129

Query: 125 FRQLKLFPAVPAGGIGMLNGIAGPLADVSFCPTGGITQETAPQFLAC 171
              LK+FPA   G   +    A    D++  P GGIT E    F A 
Sbjct: 130 ADVLKMFPAEQLGPQVVKAWRAVIARDIALLPVGGITPEGMAVFHAA 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 743,478
Number of extensions: 34307
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)